Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p01r
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   2.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.5  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   4.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  

>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  RIHKLLVXKYKRINYLYKKCYLLNTEKL 179
           R+  L++ K + IN+  ++C  L TEK+
Sbjct: 284 RLESLILEKQEEINFWKQRCRALETEKI 311


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 339 STXRSTSWAFSKSSGXASIGRSTITSPFPSSSNSAGYSTQL 461
           S+  STS   S SS  +S   ST ++   SSS+S+ +S+ L
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 330 ATFSTXRSTSWAFSKSSGXASIGRSTITSPFPSSSNSAGYS 452
           +T S+  STS + S SS  ++   S+ +S   SSS+S+  S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 330 ATFSTXRSTSWAFSKSSGXASIGRSTITSPFPSSSNSAGYST 455
           +T S+ +S+S   S  S  +S   ST+TS   SSS  A  S+
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 391 EAQPEDLEKAQLVDLXVENVAEPEDLSPVQVVXPIVENSQSE---XPGKRYPDA 239
           EA  E+    +  D  VE  ++P DL+    +  +  NSQ E     GK Y D+
Sbjct: 11  EAPLEENSPPRFFDSDVEADSKPNDLTAANSIVDLKTNSQHENANAAGKEYGDS 64


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 339 STXRSTSWAFSKSSGXASIGRSTITSPFPSSSNSAGYST 455
           S+  S++ + S SS  +S   +T TSP  SSS+S+  S+
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 529 NIVXXPVEKTXEEIENDSEVGSISWVEYPAELDEDGNGLV 410
           N++     K  E +   S +G+I     P  +DED N ++
Sbjct: 89  NLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEII 128


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 339 STXRSTSWAFSKSSGXASIGRSTITSPFPSSSNSAGYSTQLIEP 470
           S+  STS + S SS  ++   ++ +SP   SS+ +  ST L  P
Sbjct: 585 SSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,403
Number of Sequences: 5004
Number of extensions: 30587
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)