Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p01r
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 32   0.52 
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 28   6.5  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 22/92 (23%), Positives = 37/92 (40%)
 Frame = -1

Query: 511 VEKTXEEIENDSEVGSISWVEYPAELDEDGNGLVXVDLPIEAQPEDLEKAQLVDLXVENV 332
           VE T EE+E   E  + S  E    +++     V  + P+E      E+A+  D   E  
Sbjct: 49  VEATVEEVEAPMEEAAASVEEAEVPIEKAETQPVDTEGPVENAETSFEEAEAADEETEEP 108

Query: 331 AEPEDLSPVQVVXPIVENSQSEXPGKRYPDAT 236
            +  + S  +   P+VE  +     K   + T
Sbjct: 109 VKEAEGSFEEAEAPVVETEEPVKEAKASVEIT 140


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 77  RFRNSLKDTQTF-SXKV*KN*LLI*EMLFIKYRKIMNVNV 193
           RFRNS+KDT+ F S  V  +  L+   + I+ RK+ N  V
Sbjct: 111 RFRNSVKDTRVFRSSDVGSDHYLVCATVKIRLRKVQNGRV 150


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/65 (21%), Positives = 27/65 (41%)
 Frame = -1

Query: 490 IENDSEVGSISWVEYPAELDEDGNGLVXVDLPIEAQPEDLEKAQLVDLXVENVAEPEDLS 311
           ++ND EV   ++   P + +++G+G      P++   E  +    + L       P   S
Sbjct: 293 VQNDQEVSGNTYDTAPVQNEQEGSGNTDGTAPVQNDQEGFDSKDSLGLGCSEADHPTTSS 352

Query: 310 PVQVV 296
             Q V
Sbjct: 353 QTQDV 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,679
Number of Sequences: 59808
Number of extensions: 212032
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)