Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p01r
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein s...    31   0.75 
At4g21450.2 68417.m03102 vesicle-associated membrane family prot...    31   0.99 
At4g21450.1 68417.m03103 vesicle-associated membrane family prot...    31   0.99 
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    29   3.0  
At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)...    29   4.0  
At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C...    28   5.3  
At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C...    28   5.3  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    28   7.0  
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof...    27   9.2  
At2g36420.1 68415.m04471 expressed protein                             27   9.2  
At1g50290.1 68414.m05638 expressed protein                             27   9.2  

>At1g44090.1 68414.m05093 gibberellin 20-oxidase family protein
           similar to gibberellin 20-oxidase GI:4164141 from
           [Lactuca sativa]; contains Pfam domain PF03171
           2OG-Fe(II) oxygenase superfamily
          Length = 385

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 304 QVVXPIVENSQSEXPGKRYPDATWR*IIYFS-SFYLN*NIYIHNFS 170
           +++ P  E  + E   ++YPD TW  +  F+ S Y   N  +HNFS
Sbjct: 328 KIIVPPPELVEGEEASRKYPDFTWAQLQKFTQSGYRVDNTTLHNFS 373


>At4g21450.2 68417.m03102 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 212

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 366 FSKSSGXASIGRSTITSPFPSSSNSAGYSTQL 461
           F  SSG  +   S  TSPFPS ++S+  S+ L
Sbjct: 23  FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54


>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 295

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 366 FSKSSGXASIGRSTITSPFPSSSNSAGYSTQL 461
           F  SSG  +   S  TSPFPS ++S+  S+ L
Sbjct: 23  FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 451 EYPAELDEDGNGLVXVDLPIEAQPEDLEKAQLVDLXVENVAEPEDLSPVQV 299
           E P+E DE+ NG      P E   EDLE  +  D+ ++   E ++   V V
Sbjct: 375 EGPSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFESDNEQVVNV 425


>At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)
           identical to MLH1 protein [Arabidopsis thaliana]
           GI:3893081
          Length = 737

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
 Frame = -1

Query: 649 TS*TTSMLQWRTPMSRLIXSAS*TTSMLQLRTPIXXVAPXNIVXXPVEKTXEEIEN--DS 476
           +S T  M +  +P + ++         L+  + +  +A   ++  PV    E +EN  D+
Sbjct: 5   SSLTAEMEEEESPATTIVPREPPKIQRLE-ESVVNRIAAGEVIQRPVSAVKELVENSLDA 63

Query: 475 EVGSISWVEYPA-----ELDEDGNGLVXVDLPI 392
           +  SIS V         ++ +DG+G+   DLPI
Sbjct: 64  DSSSISVVVKDGGLKLIQVSDDGHGIRREDLPI 96


>At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 351

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 442 AELDEDGNGLVXVDLPIEAQPEDLEKAQLV 353
           A   +DGNGLV V L ++ +P   E+A+ +
Sbjct: 196 ATTSDDGNGLVPVQLSVDFKPNIPEEAERI 225


>At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 351

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 442 AELDEDGNGLVXVDLPIEAQPEDLEKAQLV 353
           A   +DGNGLV V L ++ +P   E+A+ +
Sbjct: 196 ATTSDDGNGLVPVQLSVDFKPNIPEEAERI 225


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 514 PVEKTXEEIENDSEVGSISWVEYPAE 437
           PV+ T  +  ND  +GSI W+ YP E
Sbjct: 553 PVDVTFAK--NDPRIGSIIWIGYPGE 576


>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 702

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 535 PXNIVXXPVEKTXEEIENDSEVGSISWVEYPAELDEDGNGLVXVDLPIEAQPEDLEK 365
           P N+     EK  EEI++D  + S    E P E +++       +L  E QP   E+
Sbjct: 49  PENLNEPEEEKISEEIDDDEPMSSHGMEENPQEEEKEREEENPEELDDEEQPMQPER 105


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 385 QPEDLEKAQLVDLXVENVAEPEDLSPVQVVXPIVENSQSEXPGKRYPD 242
           + E LEK +  +   +   + E  SPV V+ P+ E  + E   +  PD
Sbjct: 227 ETESLEKVRGQEEEDKEEEDKEQCSPVSVLDPLEEEEEDEDHHQHEPD 274


>At1g50290.1 68414.m05638 expressed protein
          Length = 134

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 437 FSRIFXPADRANFTVILDFLXRLFNW 514
           F R+F P    +F+V L  + + FNW
Sbjct: 36  FDRLFLPIALVSFSVFLSIISKDFNW 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,196
Number of Sequences: 28952
Number of extensions: 154748
Number of successful extensions: 414
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)