Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o24r
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          53   8e-08
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   0.62 
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   1.9  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               29   1.9  
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   2.5  
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         27   5.8  
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.7  
SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = -2

Query: 203 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 78
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIEEQK
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQK 43


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 357 IQATTVVQHKIKSKKNSKDTGWPLGLSV 274
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 350 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 261
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 396 PAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 217
           P VK+    ++AYI  T+  + K+K+K     T  P    V K A E+ K  + +++ P+
Sbjct: 494 PVVKR---ASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 114 LLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEFALALTTPW 251
           L+D  + + +  +  HCF+T+  T T ++ S   T  F L   +PW
Sbjct: 542 LIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFL---SPW 584


>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 269 LHTDKPSGHPVSLLFFFDLI 328
           LHT +P+GHP  ++  FD I
Sbjct: 5   LHTTEPTGHPCHIVCCFDAI 24


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 105 DNALLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEF 227
           DN LL    +  T +N    FL + K G   +   L+ TEF
Sbjct: 155 DNGLLFMETSAKTAMNVNDIFLAIGKKGKKKKGKTLNLTEF 195


>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = -2

Query: 401 CHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKL 222
           C  L+ +  ++   T +   +Y  K N   +V  P G    Q  ++      CG  K++L
Sbjct: 36  CSALTSTSALIDHTTIKLFGTYEEKGNLFFVVVAPSGSDKIQPARRVASTRSCGNSKTRL 95


>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 128 YGRGHHH-KHVSLFSYGSKDGNVQQV*LAGYHGVCSCTDHTL 250
           YG  H   K + L  YG+  G V+++ L GY        HTL
Sbjct: 238 YGTSHGLVKEIDLRGYGTSHGPVKEIELRGYGTSYRGPSHTL 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,900
Number of Sequences: 59808
Number of extensions: 265591
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)