Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o24r
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden...   114   2e-26
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi...   112   1e-25
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi...   111   2e-25
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap...    28   2.7  
At1g48740.1 68414.m05454 expressed protein                             28   2.7  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   4.8  
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.8  
At1g28320.1 68414.m03475 protease-related similar to Protease de...    27   6.3  

>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
           identical to GB:Q42351, location of EST 105E2T7,
           gb|T22624
          Length = 120

 Score =  114 bits (274), Expect = 2e-26
 Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
 Frame = -2

Query: 374 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 195
           MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ  KK    P+C     +++GI   RP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 194 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 78
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQK 101


>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
           to SP:Q42351 from [Arabidopsis thaliana]
          Length = 119

 Score =  112 bits (269), Expect = 1e-25
 Identities = 56/101 (55%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
 Frame = -2

Query: 374 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 195
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ  KK    P+C     +++GI   RP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 194 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 78
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQK 101


>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
           to 60S ribosomal protein L34 GB:P41098 [Nicotiana
           tabacum]
          Length = 120

 Score =  111 bits (267), Expect = 2e-25
 Identities = 57/101 (56%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
 Frame = -2

Query: 374 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 195
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ   K    P+C     +++GI   RPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 194 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 78
           E  RSRL   ++TV R YGGVL    V++RIVRAFL+EEQK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQK 101


>At3g56240.1 68416.m06250 copper homeostasis factor / copper
           chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 121

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 321 SKKNSKDTGWPLGLSVCKKAQEDPKVWSVQE 229
           SK   K + WP+      KA+ DPKV +V E
Sbjct: 58  SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88


>At1g48740.1 68414.m05454 expressed protein
          Length = 393

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 359 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 276
           +FR+ +S NTK + RRI+  P  G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 204  SWLDTTEFALALTTPWDLLGLFYILINQAATRCPYY 311
            SWLD    A  L   +D++G+   ++++  T+C  +
Sbjct: 5055 SWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 184 RERSAGLAGWIPRSLLLH*PHLGIFL 261
           +ERS  + GW P+ L+L  P +G FL
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVGGFL 372


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 351 ATTVVQHKIKSKKNSKDTGWPLGLSVCKKA 262
           ++  +Q  I++   SKD+GW +G S+   A
Sbjct: 141 SSAALQSLIEASSGSKDSGWDIGWSLVSAA 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,922,743
Number of Sequences: 28952
Number of extensions: 183732
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)