Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o24f
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 118 2e-27
Z83116-12|CAB60294.2| 346|Caenorhabditis elegans Hypothetical p... 31 0.48
Z81047-15|CAB02826.2| 346|Caenorhabditis elegans Hypothetical p... 31 0.48
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 1.9
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 1.9
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z11115-2|CAA77450.1| 599|Caenorhabditis elegans Hypothetical pr... 27 5.9
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 7.8
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 27 7.8
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 118 bits (284), Expect = 2e-27
Identities = 57/99 (57%), Positives = 70/99 (70%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 211
M R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 212 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 328
L ++TV R YGG L VK+RI RAFL+EEQK
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQK 99
>Z83116-12|CAB60294.2| 346|Caenorhabditis elegans Hypothetical
protein C41G6.2 protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.48
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 418 FYLNLSPKIHFVAFFADLVLACCALRTFTIFLFFNEEGSDNALLDTFMA 272
+ LSPK+ + + L C R + + N+E SDN L FM+
Sbjct: 213 YIYELSPKLKIASVVLLVTLTCILFRVRKLSVLENDESSDNTRLILFMS 261
>Z81047-15|CAB02826.2| 346|Caenorhabditis elegans Hypothetical
protein C41G6.2 protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.48
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 418 FYLNLSPKIHFVAFFADLVLACCALRTFTIFLFFNEEGSDNALLDTFMA 272
+ LSPK+ + + L C R + + N+E SDN L FM+
Sbjct: 213 YIYELSPKLKIASVVLLVTLTCILFRVRKLSVLENDESSDNTRLILFMS 261
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 23 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 199
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2377
Query: 200 ARPAERSRLCYRKKTVKR 253
A S C R T++R
Sbjct: 2378 TLLANNSETCRRNLTIQR 2395
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 23 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 199
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2380
Query: 200 ARPAERSRLCYRKKTVKR 253
A S C R T++R
Sbjct: 2381 TLLANNSETCRRNLTIQR 2398
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 3.4
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 17 SKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGI 193
S SL +V + RRR S ++S++R +VR+ G + + + R G+ +S R
Sbjct: 68 SPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSR 127
Query: 194 QPARPAERSR 223
+R RSR
Sbjct: 128 SRSRSRSRSR 137
>Z11115-2|CAA77450.1| 599|Caenorhabditis elegans Hypothetical
protein ZK637.3 protein.
Length = 599
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 412 LNLSPKIHFVAFFADLVLACCALRTFTIFLFFNEEGSD 299
L ++P V A + L CC L +FL + E+ D
Sbjct: 546 LYVTPSALIVQSLAVIALVCCMLLMVVVFLHYREKKED 583
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 253 TFHCFLTVAKTGTFSRSSW 197
TFHC LTV + +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 32 MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 205
+V +LT +++ + TK+ + V P + +KKP K+PR + +G + A
Sbjct: 67 VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126
Query: 206 PAERSR 223
PA + +
Sbjct: 127 PAAKKK 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,078
Number of Sequences: 27780
Number of extensions: 205867
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -