Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o24f
(436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden... 114 3e-26
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi... 112 1e-25
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 111 2e-25
At5g17210.2 68418.m02017 expressed protein 29 1.8
At5g17210.1 68418.m02016 expressed protein 29 1.8
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap... 28 3.1
At1g48740.1 68414.m05454 expressed protein 28 3.1
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 5.5
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.5
At1g28320.1 68414.m03475 protease-related similar to Protease de... 27 7.2
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 26 9.5
>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
identical to GB:Q42351, location of EST 105E2T7,
gb|T22624
Length = 120
Score = 114 bits (274), Expect = 3e-26
Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 211
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 212 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQK 101
>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
to SP:Q42351 from [Arabidopsis thaliana]
Length = 119
Score = 112 bits (269), Expect = 1e-25
Identities = 56/101 (55%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 211
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ KK P+C +++GI RP
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 212 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQK 101
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 111 bits (267), Expect = 2e-25
Identities = 57/101 (56%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 211
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ K P+C +++GI RPA
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60
Query: 212 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 328
E RSRL ++TV R YGGVL V++RIVRAFL+EEQK
Sbjct: 61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQK 101
>At5g17210.2 68418.m02017 expressed protein
Length = 175
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -1
Query: 361 LACCALRTFTIFLFFNEEGSDNALLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTE 182
L C + FT + F S AL D E T+ C+ + K G FS + L
Sbjct: 62 LICFVVSWFTFVIAFLVLLSGAALNDEHTEESMNAGTYFCY--IVKPGVFSTGAVLSLVT 119
Query: 181 FALAL 167
AL +
Sbjct: 120 IALGI 124
>At5g17210.1 68418.m02016 expressed protein
Length = 209
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -1
Query: 361 LACCALRTFTIFLFFNEEGSDNALLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTE 182
L C + FT + F S AL D E T+ C+ + K G FS + L
Sbjct: 96 LICFVVSWFTFVIAFLVLLSGAALNDEHTEESMNAGTYFCY--IVKPGVFSTGAVLSLVT 153
Query: 181 FALAL 167
AL +
Sbjct: 154 IALGI 158
>At3g56240.1 68416.m06250 copper homeostasis factor / copper
chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
profile PF00403: Heavy-metal-associated domain
Length = 121
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 85 SKKNSKDTGWPLGLSVCKKAQEDPKVWSVQE 177
SK K + WP+ KA+ DPKV +V E
Sbjct: 58 SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 47 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 130
+FR+ +S NTK + RRI+ P G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 202 SWLDTTEFALALTTPWDLLGLFYILINQAATRCPYY 95
SWLD A L +D++G+ ++++ T+C +
Sbjct: 5055 SWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090
>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 222 RERSAGLAGWIPRSLLLH*PHLGIFL 145
+ERS + GW P+ L+L P +G FL
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVGGFL 372
>At1g28320.1 68414.m03475 protease-related similar to Protease degS
[Precursor] (SP:P44947) [Haemophilus influenzae];
similar to DegP protease precursor (GI:2565436)
[Arabidopsis thaliana]
Length = 709
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 55 ATTVVQHKIKSKKNSKDTGWPLGLSVCKKA 144
++ +Q I++ SKD+GW +G S+ A
Sbjct: 141 SSAALQSLIEASSGSKDSGWDIGWSLVSAA 170
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 361 LACCALRTFTIFLFFNEEGSDNALLDTFMAEDTTI 257
+ CC+L+ +F+F N+ G D +D T+
Sbjct: 734 ILCCSLKPQPVFMFANQAGLDMLETTLVALQDITL 768
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,119,653
Number of Sequences: 28952
Number of extensions: 189969
Number of successful extensions: 521
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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