Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o23r
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   2.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.6  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   8.1  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.1  

>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 TWIGS*VSTRAGPTW 392
           +W+G+ + T AGP W
Sbjct: 109 SWLGTGLLTSAGPKW 123



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 387 TWIGS*VSTRAGPTW 431
           +W+G+ + T AGP W
Sbjct: 109 SWLGTGLLTSAGPKW 123



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 426 TWIGS*VSTRAGPTW 470
           +W+G+ + T AGP W
Sbjct: 109 SWLGTGLLTSAGPKW 123



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 465 TWIGS*VSTRAGPTW 509
           +W+G+ + T AGP W
Sbjct: 109 SWLGTGLLTSAGPKW 123


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 281 SHHPEHPTRADHLEHQPGHH 222
           +HH  H  +  H +H   HH
Sbjct: 164 NHHMGHHMQEQHPQHHQPHH 183


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 281 SHHPEHPTRADHLEHQPGHH 222
           +HH  H  +  H +H   HH
Sbjct: 166 NHHMGHHMQEQHPQHHQPHH 185


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 348 TWIGS*VSTRAGPTW 392
           +W+G+ + T  GP W
Sbjct: 109 SWLGTGLLTSRGPKW 123



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 387 TWIGS*VSTRAGPTW 431
           +W+G+ + T  GP W
Sbjct: 109 SWLGTGLLTSRGPKW 123



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 426 TWIGS*VSTRAGPTW 470
           +W+G+ + T  GP W
Sbjct: 109 SWLGTGLLTSRGPKW 123



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 465 TWIGS*VSTRAGPTW 509
           +W+G+ + T  GP W
Sbjct: 109 SWLGTGLLTSRGPKW 123


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 358 VRRCQLERVQLG*AHRCQLERVQHG 432
           VR  +L+   L  A R  LERVQ+G
Sbjct: 194 VRVIRLKIEDLNGAFRAGLERVQNG 218


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 293 HRRYSHHPEHPTRADHLEHQPGH 225
           H  + +H  HP  A+H+     H
Sbjct: 41  HSPHLNHAMHPYHANHVNPTANH 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,905
Number of Sequences: 336
Number of extensions: 1841
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)