Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o23r
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55749| Best HMM Match : SRCR (HMM E-Value=0) 43 2e-04
SB_44917| Best HMM Match : DUF156 (HMM E-Value=3) 37 0.011
SB_23720| Best HMM Match : GARS_C (HMM E-Value=4.2) 37 0.011
SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053) 37 0.015
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08) 35 0.059
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 33 0.18
SB_694| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_25010| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_5191| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 29 2.9
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 29 3.9
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 29 3.9
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 5.1
SB_229| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.9) 28 5.1
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_8489| Best HMM Match : Kelch_1 (HMM E-Value=1.2e-30) 28 6.7
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 28 6.7
SB_54908| Best HMM Match : zf-CCCH (HMM E-Value=0.0022) 27 8.9
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 27 8.9
SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7) 27 8.9
SB_49643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 27 8.9
>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1224
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +3
Query: 291 MAGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTW 470
+A P+ +GS + + A P+ +GS + A P+ +GS + A P+ +GS + A P+
Sbjct: 205 VANPSSLGSPFAKA--ANPSRLGSPFAKAANPSSLGSPFAKAANPSSLGSPFAKAANPSS 262
Query: 471 IGS*VSTRAGPTWIGS*FA 527
+GS + A P+ +GS FA
Sbjct: 263 LGSPFAKAANPSSLGSPFA 281
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +3
Query: 294 AGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWI 473
A P+ +GS + A P+ +GS + A P+ +GS + A P+ +GS + A P+ +
Sbjct: 193 ANPSSLGSPFAKV--ANPSSLGSPFAKAANPSRLGSPFAKAANPSSLGSPFAKAANPSSL 250
Query: 474 GS*VSTRAGPTWIGS*FA 527
GS + A P+ +GS FA
Sbjct: 251 GSPFAKAANPSSLGSPFA 268
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +3
Query: 288 TMAGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPT 467
T A P+ +GS + + A P+ +GS + A + +GS + A P+ +GS + A P+
Sbjct: 152 TGANPSSLGSPFAKA--ANPSSLGSPFAKAANTSSLGSPFAKAANPSSLGSPFAKVANPS 209
Query: 468 WIGS*VSTRAGPTWIGS*FA 527
+GS + A P+ +GS FA
Sbjct: 210 SLGSPFAKAANPSRLGSPFA 229
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 294 AGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWI 473
A P+ +GS + + A P+ +GS + A P+ +GS + A P+ +GS + A P+ +
Sbjct: 219 ANPSRLGSPFAKA--ANPSSLGSPFAKAANPSSLGSPFAKAANPSSLGSPFAKAANPSSL 276
Query: 474 GS*VSTRAGPTWIGS*FA 527
GS + A + +GS FA
Sbjct: 277 GSPFAKAANTSSLGSPFA 294
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 294 AGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWI 473
A P+ +GS + + A P+ +GS + A P+ +GS + A P+ +GS + A + +
Sbjct: 232 ANPSSLGSPFAKA--ANPSSLGSPFAKAANPSSLGSPFAKAANPSSLGSPFAKAANTSSL 289
Query: 474 GS*VSTRAGPTWIGS*FA 527
GS + A P+ +GS FA
Sbjct: 290 GSPFAKAANPSSLGSPFA 307
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 294 AGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWI 473
A P+ +GS + + A + +GS + A P+ +GS + A P+ +GS + A P+ +
Sbjct: 167 ANPSSLGSPFAKA--ANTSSLGSPFAKAANPSSLGSPFAKVANPSSLGSPFAKAANPSRL 224
Query: 474 GS*VSTRAGPTWIGS*FA 527
GS + A P+ +GS FA
Sbjct: 225 GSPFAKAANPSSLGSPFA 242
>SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)
Length = 1198
Score = 37.1 bits (82), Expect = 0.011
Identities = 29/64 (45%), Positives = 29/64 (45%)
Frame = -1
Query: 511 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 332
IHV LV T IHV LV T IHV LV T I V LV T IHV LV
Sbjct: 75 IHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELV 134
Query: 331 DVDN 320
N
Sbjct: 135 ATQN 138
Score = 36.7 bits (81), Expect = 0.015
Identities = 29/64 (45%), Positives = 29/64 (45%)
Frame = -1
Query: 511 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 332
IHV LV T IHV LV T IHV LV T I V LV T IHV LV
Sbjct: 88 IHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELV 147
Query: 331 DVDN 320
N
Sbjct: 148 VTQN 151
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/64 (43%), Positives = 29/64 (45%)
Frame = -1
Query: 511 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 332
+HV LV T IHV LV T IHV LV T I V LV T IHV LV
Sbjct: 62 MHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELV 121
Query: 331 DVDN 320
N
Sbjct: 122 ATQN 125
Score = 32.7 bits (71), Expect = 0.24
Identities = 27/64 (42%), Positives = 28/64 (43%)
Frame = -1
Query: 511 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 332
IHV LV T IHV LV T IHV LV T I V LV T HV L+
Sbjct: 101 IHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQNIIHVRYELVVTQNISHVRYELL 160
Query: 331 DVDN 320
N
Sbjct: 161 VTQN 164
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/64 (40%), Positives = 27/64 (42%)
Frame = -1
Query: 511 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 332
IHV LV T IHV LV T IHV LV T V L+ T HV LV
Sbjct: 114 IHVRYELVATQNIIHVRYELVATQNIIHVRYELVVTQNISHVRYELLVTQNISHVRYELV 173
Query: 331 DVDN 320
N
Sbjct: 174 VTPN 177
>SB_23720| Best HMM Match : GARS_C (HMM E-Value=4.2)
Length = 105
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = -1
Query: 505 VGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDV 326
+GPA+ T +GPA+ T +GPA+ T +GPA+ T +GPA+
Sbjct: 6 LGPAVSHTGTAYTLGPAVSHTGTAYTLGPAISHTGTAYTLGPAVSHTGTAYTLGPAISHT 65
Query: 325 DNYEPISVGPAIVDTPT 275
++GPA+ T T
Sbjct: 66 GT--AYTLGPAVSHTGT 80
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -1
Query: 505 VGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDV 326
+GPA+ T +GPA+ T +GPA+ T +GPA+ T +GPA+
Sbjct: 32 LGPAISHTGTAYTLGPAVSHTGTAYTLGPAISHTGTAYTLGPAVSHTGTAYTLGPAISHT 91
Query: 325 DNYEPISVGPAIVDT 281
++GPA+ T
Sbjct: 92 GT--AYTLGPAVSHT 104
>SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053)
Length = 545
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 514 PIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEP-IHVGP- 341
PIHVGP Y P+H+GP + +H+GP + P V V + P +H+GP
Sbjct: 220 PIHVGP----HYPPVHIGPHV----PAVHIGPHVPVINVPSHVPAIHVRPHVPAVHLGPP 271
Query: 340 -ALVDVDNYEP 311
+V+ N+ P
Sbjct: 272 IPIVNAGNHFP 282
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 523 NYEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEP-IQVGPAL 374
+Y P+H+GP + +H+GP + P HV V + P + +GP +
Sbjct: 226 HYPPVHIGPHV----PAVHIGPHVPVINVPSHVPAIHVRPHVPAVHLGPPI 272
>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
Length = 1188
Score = 34.7 bits (76), Expect = 0.059
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -1
Query: 505 VGPALVDTYEPI---HVGPALVDTYEPI---HVGPALVDTYEPIQVGPALVD 368
V P L EP+ +V P LV EP+ +V P L EP+ V PAL++
Sbjct: 482 VEPVLASNVEPVLSSNVEPVLVSNVEPVLASNVEPVLASNVEPVLVSPALLN 533
Score = 31.9 bits (69), Expect = 0.41
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Frame = -1
Query: 526 ANYEPI---HVGPALVDTYEPIHVGPALVDTYEPI---HVGPALVDTYEPI---QVGPAL 374
+N EP+ +V P L EP+ V PAL++ +L EP+ V P L
Sbjct: 504 SNVEPVLASNVEPVLASNVEPVLVSPALLNQCSSAMSNQCSASLASIVEPVLASNVEPVL 563
Query: 373 VDTYEPI---HVGPALVDVDNYEPI---SVGPAIVDTPTTQSTPLVQ-IILNINQATTAS 215
EP+ +V P L V + EP+ +V P + +V+ ++ +I + AS
Sbjct: 564 SSNVEPVLSSNVEPVL--VSSVEPVLASNVEPVLASIVEPVLASIVEPVLASIVEPVLAS 621
Query: 214 AVE 206
VE
Sbjct: 622 IVE 624
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 317 RTHLCWTRHRRYSHHPEHPTRADHLEHQPGHH 222
R H RHR + HHP HP + H P HH
Sbjct: 198 RRHHHHHRHRHHHHHPNHP----YSHHYPNHH 225
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 302 WTRHRRYSHHPEHPTRADHLEHQPGHH 222
+ RHRR+ HH H H H HH
Sbjct: 194 YNRHRRHHHHHRHRHHHHHPNHPYSHH 220
>SB_694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/76 (17%), Positives = 31/76 (40%)
Frame = -1
Query: 520 YEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGP 341
Y+P + + Y+P + + Y+P + + Y+P + + Y+P +
Sbjct: 171 YDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDIST 230
Query: 340 ALVDVDNYEPISVGPA 293
+ Y+P + P+
Sbjct: 231 SYYRY--YDPTDISPS 244
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/58 (17%), Positives = 24/58 (41%)
Frame = -1
Query: 520 YEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHV 347
Y+P + + Y+P + + Y+P + + Y+P + + Y+P +
Sbjct: 132 YDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDI 189
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/58 (17%), Positives = 24/58 (41%)
Frame = -1
Query: 520 YEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHV 347
Y+P + + Y+P + + Y+P + + Y+P + + Y+P +
Sbjct: 145 YDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDI 202
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/58 (17%), Positives = 24/58 (41%)
Frame = -1
Query: 520 YEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHV 347
Y+P + + Y+P + + Y+P + + Y+P + + Y+P +
Sbjct: 158 YDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDISTSYYRYYDPTDI 215
>SB_25010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 31.5 bits (68), Expect = 0.55
Identities = 25/65 (38%), Positives = 30/65 (46%)
Frame = +3
Query: 321 LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAG 500
++T T G T G V T AGP G+ V AGP IG V + AGP G+ V
Sbjct: 1 MATLTLKGCTGAGVGVGTGAGPDPAGAGVG--AGPDPIGVCVGSGAGPDPAGAGVGAGPD 58
Query: 501 PTWIG 515
P G
Sbjct: 59 PAGAG 63
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/63 (42%), Positives = 31/63 (49%)
Frame = +3
Query: 276 VGVSTMAGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTR 455
VGV T AGP G+ AGP IG V + AGP G+ V AGP G+ V
Sbjct: 14 VGVGTGAGPDPAGA----GVGAGPDPIGVCVGSGAGPDPAGAGVG--AGPDPAGAGVG-- 65
Query: 456 AGP 464
AGP
Sbjct: 66 AGP 68
Score = 27.9 bits (59), Expect = 6.7
Identities = 29/72 (40%), Positives = 35/72 (48%)
Frame = +3
Query: 288 TMAGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPT 467
T+ G T G + T AGP G+ V AGP IG V + AGP G+ V AGP
Sbjct: 5 TLKGCTGAG--VGVGTGAGPDPAGAGVG--AGPDPIGVCVGSGAGPDPAGAGVG--AGPD 58
Query: 468 WIGS*VSTRAGP 503
G+ V AGP
Sbjct: 59 PAGAGVG--AGP 68
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 31.1 bits (67), Expect = 0.72
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = -1
Query: 436 PIHVGPALVDTYEPIQVGPA--LVDTYEPIHVGPALVDVDNYEPISVGP--AIVDTPTTQ 269
P+ A +D +PI V +D +PI V +D +PI V A +D P
Sbjct: 260 PVPKVQATIDMPDPIPVPKVQTTIDMPDPIPVPKVQTTIDMPDPIPVPKVQATIDMPGPT 319
Query: 268 STPLVQIILNINQATTASAVETPAYNPQPAEI 173
P VQ +++ V+T P P +
Sbjct: 320 PVPKVQTTIDMPDPIPVPKVQTNIDMPDPIPV 351
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Frame = -1
Query: 475 PIHVGPALVDTYEPIHVGPA--LVDTYEPIQVGPA--LVDTYEPIHVGP--ALVDVDNYE 314
P+ A +D +PI V +D +PI V +D +PI V A +D+
Sbjct: 260 PVPKVQATIDMPDPIPVPKVQTTIDMPDPIPVPKVQTTIDMPDPIPVPKVQATIDMPGPT 319
Query: 313 PISVGPAIVDTPTTQSTPLVQIILNINQATTASAVETPAYNPQPAEI 173
P+ +D P P VQ +++ V+T P P +
Sbjct: 320 PVPKVQTTIDMPDPIPVPKVQTNIDMPDPIPVPKVQTTVDMPGPTPV 366
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Frame = -1
Query: 424 GPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPA--IVDTPTTQSTPLVQ 251
GP V + P +D +P V +D +PI V +D P P VQ
Sbjct: 377 GPIPVPKVQTTIDMPGPIDMPDPTPVPKVQTTIDMPDPIPVPKVQTTIDMPGPTPVPKVQ 436
Query: 250 IILNINQATTASAVETPAYNPQPAEI 173
+++ T V+T P P +
Sbjct: 437 TTIDMPDPTPVPKVQTTIDMPGPTPV 462
>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = -1
Query: 502 GPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVD 323
GP +D + + GP D + H P + D + GP D + + GP DV
Sbjct: 502 GPLAIDVLQMKYEGPLASDVPQVKHERPLVSDVPQVKYEGPLASDVPQEKNEGPLASDV- 560
Query: 322 NYEPISVGPAIVDTPTTQ-STPLVQIILNIN-QATTASAVE 206
+ GP D P + PLV + + + AS V+
Sbjct: 561 -LQVKYEGPLASDVPQVKHERPLVSDVPQVKYEGPLASEVQ 600
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -1
Query: 502 GPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVD 323
GP D + + GP D + + GP D + GP D + + GP +DV
Sbjct: 450 GPLASDVLQVKYEGPLASDVPQVKYEGPLASDVPQVKYGGPLASDVPQEKNEGPLAIDV- 508
Query: 322 NYEPISVGPAIVDTPTTQ-STPLV 254
+ GP D P + PLV
Sbjct: 509 -LQMKYEGPLASDVPQVKHERPLV 531
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = -1
Query: 502 GPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVD 323
GP D + + GP D + + GP D + GP +D + + GP DV
Sbjct: 463 GPLASDVPQVKYEGPLASDVPQVKYGGPLASDVPQEKNEGPLAIDVLQMKYEGPLASDVP 522
Query: 322 NYEPISVGPAIVDTP 278
+ P + D P
Sbjct: 523 QVK--HERPLVSDVP 535
>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -1
Query: 502 GPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVD 323
GP ++D P P ++D P P ++D P GP ++D P P + +D
Sbjct: 466 GPCVMDHRGPKTQVPYVMDHGRPKTQVPYVMDHGRPKTQGPCVMDHGRPKTQVPYV--MD 523
Query: 322 NYEPISVGPAIVD--TPTTQ 269
+ P + GP ++D P TQ
Sbjct: 524 HGRPKTQGPYVMDHGRPKTQ 543
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -1
Query: 499 PALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDN 320
P ++D P GP ++D P P ++D P P ++D P GP + +D+
Sbjct: 454 PYVMDHRRPKTQGPCVMDHRGPKTQVPYVMDHGRPKTQVPYVMDHGRPKTQGPCV--MDH 511
Query: 319 YEPISVGPAIVD--TPTTQ 269
P + P ++D P TQ
Sbjct: 512 GRPKTQVPYVMDHGRPKTQ 530
>SB_5191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -1
Query: 502 GPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVD 323
GP +D + + GP D + H P + D + GP D + + GP DV
Sbjct: 44 GPLAIDVLQMKYEGPLASDVPQVKHERPLVSDVPQVKYEGPLASDVPQEKNEGPLASDV- 102
Query: 322 NYEPISVGPAIVDTPTTQ-STPLV 254
+ GP D P + PLV
Sbjct: 103 -LQVKYEGPLASDVPQVKHERPLV 125
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = -1
Query: 502 GPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVD 323
GP D + + GP D + + GP D + GP +D + + GP DV
Sbjct: 5 GPLASDVPQVKYEGPLASDVPQVKYGGPLASDVPQEKNEGPLAIDVLQMKYEGPLASDVP 64
Query: 322 NYEPISVGPAIVDTP 278
+ P + D P
Sbjct: 65 QVK--HERPLVSDVP 77
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Frame = -1
Query: 508 HVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVD 329
H P + D + + GP D + + GP D + GP D + H P + D
Sbjct: 68 HERPLVSDVPQVKYEGPLASDVPQEKNEGPLASDVLQVKYEGPLASDVPQVKHERPLVSD 127
Query: 328 VD--NYEPISVGPAIVDTPTTQSTPLVQIILNI 236
V YE + T + PLV N+
Sbjct: 128 VPQVKYEGPLASDIGLSTLNSSVNPLVYTFQNV 160
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 283 TPTTQSTPLVQIILNINQATTASAVETPAYNPQPA 179
TPTT TP + T S TP+Y P P+
Sbjct: 21 TPTTSYTPTPSYTPTTSYTCTTSYTPTPSYTPTPS 55
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 322 NYEPI-SVGPAIVDTPTTQSTPLVQIILNINQATTASAVETPAYNPQPA 179
+Y P S P TPTT TP + T S T +Y P P+
Sbjct: 67 SYTPTTSYTPTPSYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPS 115
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 322 NYEPI-SVGPAIVDTPTTQSTPLVQIILNINQATTASAVETPAYNPQPA 179
+Y P S P T TT TP + T S TP+Y P P+
Sbjct: 79 SYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSYTPTPS 127
>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = -3
Query: 509 PRWTCSS*HLRTYPCWTCSSRHL*AYPCWTRSS*HL*AYPSWTRSS*HLRTYPRW 345
P+W C++ P W +++ A P W + A P W ++ P+W
Sbjct: 920 PKWRCNTKMAHATPKWRWNTKMAHATPKWRCDTKIAFATPKWRCNTKMAHATPKW 974
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 343 PALVDVDNYEPISVGPAIVDTPTTQSTPLVQIILNINQATTASAVE 206
P V + PIS PAI++ S L +IL++N TA VE
Sbjct: 340 PISKGVTSKGPISPDPAIMEEIDGLSNTLDDLILSLNDVDTAEPVE 385
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 307 SVGPAIVDTPTTQSTPLVQIILNINQATTASAVETPAYN 191
SVG A T T S+P V+I LN A+T S A N
Sbjct: 334 SVGIAFSTTVTATSSPTVEIALNTTVASTPSPTVEIALN 372
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 307 SVGPAIVDTPTTQSTPLVQIILNINQATTASAVETPAYN 191
SVG A T T S+P V++ LN A T S A N
Sbjct: 1040 SVGIAFSTTVTATSSPTVELALNTTVAATPSPTVELALN 1078
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = -3
Query: 515 TYPRWTCSS*HLRTYPCWTCSSRHL*AYPCWTRSS*HL*AYPSWTRSS*HLRTYPR 348
TYP S H TYP S H YP S YP S H TYP+
Sbjct: 1036 TYPETFASFEHRVTYPETFASFEHRVTYPKTFASFEQRVTYPETFASFEHRVTYPK 1091
>SB_229| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.9)
Length = 229
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/63 (22%), Positives = 25/63 (39%)
Frame = -1
Query: 421 PALVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQIIL 242
P++ D P+ VGP L PI + + + GP + + + P +I
Sbjct: 12 PSVEDKRSPVAVGPVLWHLLSPISLSELKAALSGNSKTAAGPDKITSNDLRGLPCEDLIA 71
Query: 241 NIN 233
+ N
Sbjct: 72 HFN 74
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1
Query: 514 PIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVG 344
P++V + +P+ +G + +Y + ++DT I G ++DT +HVG
Sbjct: 4546 PVNVDLTIEILVKPLRLGGTFI-SYSHLKTFALVIDTTYKIYHGTDIIDTRLKVHVG 4601
>SB_8489| Best HMM Match : Kelch_1 (HMM E-Value=1.2e-30)
Length = 619
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 228 AWLMFKMICTSGVLWVVGVSTM 293
AWL F+ +CT ++++G M
Sbjct: 366 AWLYFRAVCTKNFIYIIGERVM 387
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -3
Query: 296 RHRRYSHHPEHPTRADHLEHQPGHH 222
RHR + HH H H H HH
Sbjct: 254 RHRYHHHHHHHHQHNHHQHHHHHHH 278
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 293 HRRYSHHPEHPTRADHLEHQPGHH 222
H +++HH H H HQ HH
Sbjct: 50 HHQHNHHQHHHHHNHHHHHQQHHH 73
>SB_54908| Best HMM Match : zf-CCCH (HMM E-Value=0.0022)
Length = 265
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -1
Query: 478 EPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEP--IHVGPALVDVDNYEPIS 305
+P+ G + + P++ A+ TY + L DT E IH+ L+D EP
Sbjct: 4 DPLMSGLQVFCSMAPVYSPRAVGVTYRRPTLVLELYDTTEDEDIHINQVLIDTGLAEPCE 63
Query: 304 VGPAIVDTPTTQSTPLVQ 251
+ TPT T V+
Sbjct: 64 ENLQVDLTPTDNGTDEVE 81
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 493 LVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYE 314
+ DT P + P++V+ P V T P V P +V T P V P +V
Sbjct: 44 VADTDPPTNP-PSVVEVTTTQAPPPPPVVTEAPTTVPPPVV-TDAPTTVPPPVV---TDA 98
Query: 313 PISVGPAIV-DTPTTQSTPLV 254
P +V P +V D PTT P+V
Sbjct: 99 PTTVPPPVVTDAPTTVPPPVV 119
>SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)
Length = 323
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/93 (21%), Positives = 45/93 (48%)
Frame = -3
Query: 515 TYPRWTCSS*HLRTYPCWTCSSRHL*AYPCWTRSS*HL*AYPSWTRSS*HLRTYPRWTCS 336
TY + ++ H+ TY + ++RH+ Y ++++ + Y + +++S ++ TY T S
Sbjct: 7 TYNTTSQATRHVHTYNTTSKATRHVHTYNITSQATRFVHTYNTTSQASLYVHTYN--TTS 64
Query: 335 CGC*QLRTHLCWTRHRRYSHHPEHPTRADHLEH 237
+ T+ ++ Y H ++A H H
Sbjct: 65 QATRHVHTYNTTSQATHYVHTYNTTSQATHYVH 97
>SB_49643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 187 EDYRRGFQQQKQWWPG*CS 243
E++R GF+Q +W+P CS
Sbjct: 283 ENFRNGFKQTLKWFPSSCS 301
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 283 TPTTQSTPLVQIILNINQATTASAVETPAYNPQPA 179
TPTT TP + +T S T +Y P P+
Sbjct: 156 TPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTPTPS 190
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,460
Number of Sequences: 59808
Number of extensions: 263205
Number of successful extensions: 1047
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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