Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o23r
         (607 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB051470-1|BAB21774.1|  832|Homo sapiens KIAA1683 protein protein.     38   0.027
AK055141-1|BAB70862.1|  260|Homo sapiens protein ( Homo sapiens ...    34   0.34 
U91931-1|AAD03778.1| 1093|Homo sapiens AP-3 complex beta3A subun...    32   1.4  
U81504-1|AAB61638.1| 1094|Homo sapiens beta-3A-adaptin subunit o...    32   1.4  
BC038444-1|AAH38444.1| 1094|Homo sapiens adaptor-related protein...    32   1.4  
AB028964-1|BAA82993.2|  642|Homo sapiens KIAA1041 protein protein.     31   4.2  

>AB051470-1|BAB21774.1|  832|Homo sapiens KIAA1683 protein protein.
          Length = 832

 Score = 37.9 bits (84), Expect = 0.027
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -1

Query: 520 YEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGP 341
           ++P  V P+     + I   P L   ++P  V P+    Y+  +V P+   +Y+P  V P
Sbjct: 95  FQPTEVSPSPTYPSQAIREYPTLAQPFQPTEVSPSPAHPYQLTEVSPSAAYSYQPTEVSP 154



 Score = 36.7 bits (81), Expect = 0.063
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
 Frame = -1

Query: 499 PALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDN 320
           P L   ++P  V P+     + I   P L   ++P +V P+    Y+   V P+     +
Sbjct: 89  PMLAQPFQPTEVSPSPTYPSQAIREYPTLAQPFQPTEVSPSPAHPYQLTEVSPSA--AYS 146

Query: 319 YEPISVGPAIVDTPTTQSTPLVQIILNINQATTASAVE-TPAYNPQPAEI 173
           Y+P  V P     P   S   +++  +    + A+ V  +P Y  QP EI
Sbjct: 147 YQPTEVSP----NPGYLSM-AIEMSPSPGYPSVATEVSPSPTYPYQPTEI 191



 Score = 32.7 bits (71), Expect = 1.0
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -1

Query: 517 EPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPA 338
           +P    P+L      I V P L  + + I V P+L    + I V P+L   +  I V P 
Sbjct: 356 QPTGESPSLTQPSLTIRVSPCLAMSSQTIGVSPSLAMPSQTIGVSPSLAMPFHTIGVSPT 415

Query: 337 L 335
           L
Sbjct: 416 L 416



 Score = 32.3 bits (70), Expect = 1.4
 Identities = 27/100 (27%), Positives = 43/100 (43%)
 Frame = -1

Query: 511 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 332
           I V P L  + + I V P+L    + I V P+L   +  I V P L      I   P+L 
Sbjct: 371 IRVSPCLAMSSQTIGVSPSLAMPSQTIGVSPSLAMPFHTIGVSPTLAHPSMAIRESPSLA 430

Query: 331 DVDNYEPISVGPAIVDTPTTQSTPLVQIILNINQATTASA 212
                 P S G +   T  +Q+T +   + + + A+  S+
Sbjct: 431 Q----PPQSTGESPSLTWPSQATGVSPSVAHQSVASRVSS 466


>AK055141-1|BAB70862.1|  260|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to
           DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (EC
           2.7.7.6). ).
          Length = 260

 Score = 34.3 bits (75), Expect = 0.34
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +3

Query: 267 LWVVGVSTMAGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*V 446
           +WV  + +  G T+  +  + S RA  +W G   STR   +W G   S+RA  +W GS +
Sbjct: 11  VWVQSLRSYTGSTQGHNSWTGSNRACSSWTG---STRGHSSWTG---SSRACSSWTGSRM 64

Query: 447 ------STRAGPTWIGS 479
                 S RA  +W GS
Sbjct: 65  IHSLRSSNRAYNSWTGS 81


>U91931-1|AAD03778.1| 1093|Homo sapiens AP-3 complex beta3A subunit
           protein.
          Length = 1093

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -1

Query: 358 PIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQII-LNINQATTASAVETPAYNPQP 182
           P+    +L+D+D++ P+S  P  + TP    + +  +  L+++ +++  +V TPA+ P  
Sbjct: 810 PLTKDVSLLDLDDFNPVST-PVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTK 868

Query: 181 AEIV 170
             ++
Sbjct: 869 THVL 872


>U81504-1|AAB61638.1| 1094|Homo sapiens beta-3A-adaptin subunit of
           the AP-3 complex protein.
          Length = 1094

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -1

Query: 358 PIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQII-LNINQATTASAVETPAYNPQP 182
           P+    +L+D+D++ P+S  P  + TP    + +  +  L+++ +++  +V TPA+ P  
Sbjct: 811 PLTKDVSLLDLDDFNPVST-PVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTK 869

Query: 181 AEIV 170
             ++
Sbjct: 870 THVL 873


>BC038444-1|AAH38444.1| 1094|Homo sapiens adaptor-related protein
           complex 3, beta 1 subunit protein.
          Length = 1094

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -1

Query: 358 PIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQII-LNINQATTASAVETPAYNPQP 182
           P+    +L+D+D++ P+S  P  + TP    + +  +  L+++ +++  +V TPA+ P  
Sbjct: 811 PLTKDVSLLDLDDFNPVST-PVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTK 869

Query: 181 AEIV 170
             ++
Sbjct: 870 THVL 873


>AB028964-1|BAA82993.2|  642|Homo sapiens KIAA1041 protein protein.
          Length = 642

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 281 SHHPEHPTRADHLEHQPGH 225
           S HP+HP+   H++H P H
Sbjct: 432 SPHPQHPSPHQHIQHHPNH 450


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,238,497
Number of Sequences: 237096
Number of extensions: 1300237
Number of successful extensions: 2486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)