Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o23r
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 36 0.030
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.64
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.6
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 27 7.9
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 27 7.9
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 35.5 bits (78), Expect = 0.030
Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Frame = +3
Query: 279 GVSTMAGP-TEMGS*LSTSTRAGPTWIGS*VSTRAGP-------TWIGS*VSTRAGPTWI 434
G ST +GP T GS +ST+ A T GS ST +GP T S VST +GP+
Sbjct: 522 GPSTTSGPSTTSGSTVSTTPGASTT-SGSTQSTTSGPSTSSGPSTASRSTVSTTSGPS-T 579
Query: 435 GS*VSTRAGP-TWIGS*VSTRAGPT 506
S ST +GP T GS ST +GP+
Sbjct: 580 TSGPSTTSGPSTTSGSTKSTTSGPS 604
Score = 35.1 bits (77), Expect = 0.039
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 279 GVSTMAGPTEMGS*LSTSTRAGPTWIG-S*VSTRAGPTWIGS*VSTRAGP-TWIGS*VST 452
G ST +G T+ + ST +GP+ S VST +GP+ ST +GP T GS ST
Sbjct: 542 GASTTSGSTQSTT-SGPSTSSGPSTASRSTVSTTSGPSTTSG-PSTTSGPSTTSGSTKST 599
Query: 453 RAGP-TWIGS*VSTRAG 500
+GP T G +ST +G
Sbjct: 600 TSGPSTTSGKNISTVSG 616
Score = 31.1 bits (67), Expect = 0.64
Identities = 34/76 (44%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 285 STMAGP-TEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIG--S*VSTRAGPTWIGS*VSTR 455
ST +GP T GS +ST T T G+ ST +GPT S VS R T G ST
Sbjct: 470 STTSGPSTSSGSTVST-TSGQSTSSGTTKSTTSGPTTSSGPSTVSERTLSTTSGP--STT 526
Query: 456 AGP-TWIGS*VSTRAG 500
+GP T GS VST G
Sbjct: 527 SGPSTTSGSTVSTTPG 542
Score = 29.9 bits (64), Expect = 1.5
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +3
Query: 279 GVSTMAGPTEM---GS*LSTSTRAGPTWIGS*VSTRAGPTWI-GS*VSTRAGPTWIGS*V 446
G ST +G T GS STS + + GS VST GP+ I G ST +GPT
Sbjct: 364 GPSTTSGSTASTTSGSLFSTSLGSSQS-PGSSVSTTPGPSTISGISQSTTSGPT------ 416
Query: 447 STRAGPTWIGS*VSTRAGPT 506
+T T GS VS +GP+
Sbjct: 417 TTSEPSTTSGSTVSDTSGPS 436
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.1 bits (67), Expect = 0.64
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -1
Query: 469 HVGPALVDTYEPIHVGPA-LVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPA 293
H G ++ + I VGP L D+ E G ++ D+ P+ V PA D+ N E ISV PA
Sbjct: 378 HEGKCVLRQQQKI-VGPGELCDSGETCGKG-SICDSVIPVCVCPAQTDLSNGECISV-PA 434
Query: 292 IVDTPTTQSTP 260
P TP
Sbjct: 435 PTSQPVQVMTP 445
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 460 PALVDTYEPIHVGPA-LVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPAIVD 284
P L + +GP L D+ E G ++ D+ P+ V PA D+ N E ISV PA
Sbjct: 283 PVLESKPKVATLGPGELCDSGETCGKG-SICDSVIPVCVCPAQTDLSNGECISV-PAPTS 340
Query: 283 TPTTQSTP 260
P TP
Sbjct: 341 QPVQVMTP 348
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/86 (22%), Positives = 31/86 (36%)
Frame = -1
Query: 439 EPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPAIVDTPTTQSTP 260
+ + + P+ +P+QV P A D N P P + +TP T
Sbjct: 722 QQVRIPPSTAPVQKPVQVSAPTHSNVAPTTSSQASADARNPLPPKTSPPVSNTPIT---- 777
Query: 259 LVQIILNINQATTASAVETPAYNPQP 182
+ ++ A T SA T +P
Sbjct: 778 ----VAPVHAAPTTSAPSTSVVTRRP 799
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/86 (22%), Positives = 31/86 (36%)
Frame = -1
Query: 439 EPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPAIVDTPTTQSTP 260
+ + + P+ +P+QV P A D N P P + +TP T
Sbjct: 829 QQVRIPPSTAPVQKPVQVSAPTHSNVAPTTSSQASADARNPLPPKTSPPVSNTPIT---- 884
Query: 259 LVQIILNINQATTASAVETPAYNPQP 182
+ ++ A T SA T +P
Sbjct: 885 ----VAPVHAAPTTSAPSTSVVTRRP 906
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,679
Number of Sequences: 27780
Number of extensions: 183090
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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