Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o23f
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    29   0.72 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    28   0.95 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    28   1.3  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   6.7  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   6.7  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   8.8  

>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 148 PALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPAIVDT 327
           P L+D     H     VDT+ PI++GP  V T+  I    A + +     + +    +  
Sbjct: 228 PDLLDGPPDYHESTK-VDTHLPIKMGPLDVQTHPNIR-SIASLALSRKALLPISSPSIPM 285

Query: 328 PTTQSTPLVQIILNI-NQATTASAVETPA 411
              +STP   II  +  Q+   SAV +PA
Sbjct: 286 SIYRSTPPDTIIQQLTTQSDDISAVSSPA 314


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 178 HVGPALVDTYEPIQVGPALVDTYEPIHVGPAL-VDVDNYEPISVGPAIVDT 327
           H+ P        + + P L     P HV  +L VD++N+EPI V  A  D+
Sbjct: 331 HLPPLFNFNLAELSIRPNLNKAILPPHVYESLDVDINNFEPIVVKQADADS 381


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 226 PALVDTYEPIHVGPALVDVDNYEPISVG 309
           PAL DT+EP H+GP+  D   Y+  S+G
Sbjct: 44  PAL-DTFEPRHIGPSKTD-QQYQLESLG 69



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 109 PALVDTYEPIHVGPALVD 162
           PAL DT+EP H+GP+  D
Sbjct: 44  PAL-DTFEPRHIGPSKTD 60



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 148 PALVDTYEPIHVGPALVD 201
           PAL DT+EP H+GP+  D
Sbjct: 44  PAL-DTFEPRHIGPSKTD 60


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 199 DTYEPIQVGPALVDTYEPIHVGPALVDVDNYEPISVGPAI--VDTPT-TQSTPLV 354
           D + P+++   L D    + V     DVDN EPI  G  +  VD  T T S PL+
Sbjct: 341 DRWVPLRINLLLPDENGKLKVCD---DVDNPEPIKYGSIVELVDEATGTTSDPLI 392


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +1

Query: 301 SVGPAIVDTPTTQS----TPLVQIILNINQATTASAVETPAYNPQPAE 432
           S  PA   TPTT      T LV     ++    ASAVET A   Q  E
Sbjct: 187 STRPANSQTPTTTRASSYTTLVSTSNQVSNEAEASAVETSANQAQNTE 234


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 315 HRRYSHHPEHPTRADHLEHQPGHHCF 392
           H R  HHP HP    H  + P  +CF
Sbjct: 172 HTRPPHHPPHP--HFHNNNYPPPYCF 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,472
Number of Sequences: 5004
Number of extensions: 31762
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)