Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o23f
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849     30   1.7  
07_03_1232 + 25052415-25052918                                         29   3.0  
07_03_1234 + 25064187-25064900                                         28   6.9  
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915...    28   6.9  
01_01_0616 + 4586086-4586835                                           28   6.9  
09_04_0393 + 17255315-17256019,17256107-17257909                       27   9.1  
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    27   9.1  

>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
          Length = 365

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 313 AIVDTPTTQSTPLVQIILNINQATTASAVETPAYN--PQPAEI 435
           A   TPTT +TP    I  IN ATT +    P     P PA I
Sbjct: 229 AAATTPTTPATPSSNTIAVINHATTTTTTTNPFPTDVPPPAPI 271


>07_03_1232 + 25052415-25052918
          Length = 167

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 333 HPEHPTRADHLEHQPGHHCFCC*NPRL*SSASRDC*EACG 452
           HP H  +  H   + GH C C    R+ + A   C E CG
Sbjct: 10  HPGHSLKRHHYGGEEGHACVCALCERIIAGAGYRCGE-CG 48


>07_03_1234 + 25064187-25064900
          Length = 237

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 309 TRHRRYSHHPEHPTRADHLEHQPGHHCFCC 398
           TR RR+  HP+H     H      H C  C
Sbjct: 3   TRQRRHFAHPQHLLLRTHYSTTSSHFCDIC 32


>07_03_0699 +
           20772415-20773450,20789050-20789606,20790971-20791567,
           20792258-20792413
          Length = 781

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 172 PIHVGPALVDTY-EPIQVGPALVDTYEPIHVGPALV 276
           P H  P LVD + +P + GP L+    P H  PA+V
Sbjct: 65  PPHEVPPLVDGHRDPRRDGPELIAINLPDHAAPAVV 100



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 94  PIHVGPALVDTY-EPIHVGPALVDTYEPIHVGPALV 198
           P H  P LVD + +P   GP L+    P H  PA+V
Sbjct: 65  PPHEVPPLVDGHRDPRRDGPELIAINLPDHAAPAVV 100


>01_01_0616 + 4586086-4586835
          Length = 249

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 HRRYSHHPEHPTRADHLEHQPGHHCFCC 398
           H R+ H P  P     +E + G HC  C
Sbjct: 125 HHRHHHDPSLPDAVLRVERRGGRHCVRC 152


>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +1

Query: 100 HVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVD 279
           ++ P  VD     ++ P  VD     ++ P  V+      + P  VD     ++ P  +D
Sbjct: 26  NIDPNSVDILSSSNIDPNSVDILSSSNIDPNSVNVLSSSNIDPNSVDILSSSNIDPNSID 85

Query: 280 V 282
           V
Sbjct: 86  V 86


>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
            26449505-26449606,26449696-26449788,26449934-26450181,
            26451088-26451274,26451825-26452043,26452464-26452660,
            26453545-26453875,26454099-26454457,26455141-26455240,
            26455349-26455464,26455547-26455663,26455782-26455880,
            26456057-26456131,26456205-26456286,26457724-26457763,
            26458685-26458769,26458924-26459055
          Length = 1303

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 310  PAIVDTPTTQSTPLVQIILNINQATTASAVETPAYNPQPAE 432
            P +  TP  Q TP+ +       A TA        NP+ A+
Sbjct: 1148 PMVQGTPMVQGTPMAEGTTGAQAAPTAQGAPAQTQNPEEAK 1188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,457
Number of Sequences: 37544
Number of extensions: 228443
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)