Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o23f
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB051470-1|BAB21774.1| 832|Homo sapiens KIAA1683 protein protein. 38 0.029
AK055141-1|BAB70862.1| 260|Homo sapiens protein ( Homo sapiens ... 34 0.35
U91931-1|AAD03778.1| 1093|Homo sapiens AP-3 complex beta3A subun... 32 1.4
U81504-1|AAB61638.1| 1094|Homo sapiens beta-3A-adaptin subunit o... 32 1.4
BC038444-1|AAH38444.1| 1094|Homo sapiens adaptor-related protein... 32 1.4
AB028964-1|BAA82993.2| 642|Homo sapiens KIAA1041 protein protein. 31 4.3
>AB051470-1|BAB21774.1| 832|Homo sapiens KIAA1683 protein protein.
Length = 832
Score = 37.9 bits (84), Expect = 0.029
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 88 YEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGP 267
++P V P+ + I P L ++P V P+ Y+ +V P+ +Y+P V P
Sbjct: 95 FQPTEVSPSPTYPSQAIREYPTLAQPFQPTEVSPSPAHPYQLTEVSPSAAYSYQPTEVSP 154
Score = 36.7 bits (81), Expect = 0.066
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +1
Query: 109 PALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALVDVDN 288
P L ++P V P+ + I P L ++P +V P+ Y+ V P+ +
Sbjct: 89 PMLAQPFQPTEVSPSPTYPSQAIREYPTLAQPFQPTEVSPSPAHPYQLTEVSPSA--AYS 146
Query: 289 YEPISVGPAIVDTPTTQSTPLVQIILNINQATTASAVE-TPAYNPQPAEI 435
Y+P V P P S +++ + + A+ V +P Y QP EI
Sbjct: 147 YQPTEVSP----NPGYLSM-AIEMSPSPGYPSVATEVSPSPTYPYQPTEI 191
Score = 32.7 bits (71), Expect = 1.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 91 EPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPA 270
+P P+L I V P L + + I V P+L + I V P+L + I V P
Sbjct: 356 QPTGESPSLTQPSLTIRVSPCLAMSSQTIGVSPSLAMPSQTIGVSPSLAMPFHTIGVSPT 415
Query: 271 L 273
L
Sbjct: 416 L 416
Score = 32.3 bits (70), Expect = 1.4
Identities = 27/100 (27%), Positives = 43/100 (43%)
Frame = +1
Query: 97 IHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIHVGPALV 276
I V P L + + I V P+L + I V P+L + I V P L I P+L
Sbjct: 371 IRVSPCLAMSSQTIGVSPSLAMPSQTIGVSPSLAMPFHTIGVSPTLAHPSMAIRESPSLA 430
Query: 277 DVDNYEPISVGPAIVDTPTTQSTPLVQIILNINQATTASA 396
P S G + T +Q+T + + + + A+ S+
Sbjct: 431 Q----PPQSTGESPSLTWPSQATGVSPSVAHQSVASRVSS 466
>AK055141-1|BAB70862.1| 260|Homo sapiens protein ( Homo sapiens
cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (EC
2.7.7.6). ).
Length = 260
Score = 34.3 bits (75), Expect = 0.35
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -1
Query: 341 LWVVGVSTMAGPTEMGS*LSTSTRAGPTWIGS*VSTRAGPTWIGS*VSTRAGPTWIGS*V 162
+WV + + G T+ + + S RA +W G STR +W G S+RA +W GS +
Sbjct: 11 VWVQSLRSYTGSTQGHNSWTGSNRACSSWTG---STRGHSSWTG---SSRACSSWTGSRM 64
Query: 161 ------STRAGPTWIGS 129
S RA +W GS
Sbjct: 65 IHSLRSSNRAYNSWTGS 81
>U91931-1|AAD03778.1| 1093|Homo sapiens AP-3 complex beta3A subunit
protein.
Length = 1093
Score = 32.3 bits (70), Expect = 1.4
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQII-LNINQATTASAVETPAYNPQP 426
P+ +L+D+D++ P+S P + TP + + + L+++ +++ +V TPA+ P
Sbjct: 810 PLTKDVSLLDLDDFNPVST-PVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTK 868
Query: 427 AEIV 438
++
Sbjct: 869 THVL 872
>U81504-1|AAB61638.1| 1094|Homo sapiens beta-3A-adaptin subunit of
the AP-3 complex protein.
Length = 1094
Score = 32.3 bits (70), Expect = 1.4
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQII-LNINQATTASAVETPAYNPQP 426
P+ +L+D+D++ P+S P + TP + + + L+++ +++ +V TPA+ P
Sbjct: 811 PLTKDVSLLDLDDFNPVST-PVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTK 869
Query: 427 AEIV 438
++
Sbjct: 870 THVL 873
>BC038444-1|AAH38444.1| 1094|Homo sapiens adaptor-related protein
complex 3, beta 1 subunit protein.
Length = 1094
Score = 32.3 bits (70), Expect = 1.4
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 PIHVGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQII-LNINQATTASAVETPAYNPQP 426
P+ +L+D+D++ P+S P + TP + + + L+++ +++ +V TPA+ P
Sbjct: 811 PLTKDVSLLDLDDFNPVST-PVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTK 869
Query: 427 AEIV 438
++
Sbjct: 870 THVL 873
>AB028964-1|BAA82993.2| 642|Homo sapiens KIAA1041 protein protein.
Length = 642
Score = 30.7 bits (66), Expect = 4.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 327 SHHPEHPTRADHLEHQPGH 383
S HP+HP+ H++H P H
Sbjct: 432 SPHPQHPSPHQHIQHHPNH 450
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,526,847
Number of Sequences: 237096
Number of extensions: 1363243
Number of successful extensions: 2708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2664
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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