Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o23f
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    32   0.27 
At5g01480.1 68418.m00061 DC1 domain-containing protein contains ...    31   0.47 
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   3.3  
At5g43430.1 68418.m05310 electron transfer flavoprotein beta sub...    27   7.6  

>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 303 CWTRHRRYSHHPEHPTRADHLEHQPGH--HCFCC 398
           C  R   Y  HP HP+ A  L  +PGH  +C  C
Sbjct: 51  CGDRSSEYIEHPSHPSHALQLLRKPGHTRNCNLC 84


>At5g01480.1 68418.m00061 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 413

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 321 RYSHHPEHPTRADHLEHQPGHHCFCC*NP 407
           ++  HP H  R + + H   HHC  C  P
Sbjct: 314 QHQSHPRHQLRLEKIFHDESHHCQACRRP 342


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 33/114 (28%), Positives = 42/114 (36%)
 Frame = +1

Query: 79  PANYEPIHVGPALVDTYEPIHVGPALVDTYEPIHVGPALVDTYEPIQVGPALVDTYEPIH 258
           P +  PI + P    TY+P            P +  P    T +P    P    T  P+ 
Sbjct: 91  PVSTPPIKLPPVQPPTYKPPTPTVKPPSVQPPTYKPPT--PTVKPPTTSPVKPPTTPPVQ 148

Query: 259 VGPALVDVDNYEPISVGPAIVDTPTTQSTPLVQIILNINQATTASAVETPAYNP 420
             P  V    Y+P    P  V  PTT  TP V+        TT   V+ P YNP
Sbjct: 149 SPP--VQPPTYKP-PTSP--VKPPTT--TPPVK------PPTTTPPVQPPTYNP 189


>At5g43430.1 68418.m05310 electron transfer flavoprotein beta
           subunit family protein contains Pfam profile: PF01012
           electron transfer flavoprotein, beta subunit
          Length = 251

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 268 ALVDVDNYEPISVGPAIVDTPTTQSTPLVQIILNINQATTASAV 399
           +L DV+N   I +G   +D    Q+  +V  +L   QAT AS V
Sbjct: 103 SLADVENPGLIFLGKQAIDDDCNQTGQMVAALLGWPQATFASKV 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,216
Number of Sequences: 28952
Number of extensions: 172953
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)