Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o22r
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    33   0.14 
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    33   0.14 
At4g11940.1 68417.m01897 hypothetical protein predicted proteins...    28   3.9  
At1g67140.1 68414.m07638 expressed protein                             28   3.9  
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080...    27   5.1  
At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   6.8  
At1g34180.1 68414.m04239 no apical meristem (NAM) family protein...    27   9.0  

>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 171 SETEKSGDHSPQSKNDGTWDSKLSPVL 91
           SE+    DH P+SKN   WDS L+ VL
Sbjct: 487 SESSVDSDHEPKSKNTKKWDSLLNRVL 513


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 92  KTGESFESHVPSFFDWGEWS-PLFSVSEIFTKRSLNFFSTLSSEMDLSTSSIVVPVGRT 265
           +TG +F     +F  +G+ S P F  + IF K S  F +  SS   L+TSS   P G+T
Sbjct: 550 QTGSAFGQTGSAFGQFGQSSAPAFGQNSIFNKPSTGFGNMFSSSSTLTTSS-SSPFGQT 607


>At4g11940.1 68417.m01897 hypothetical protein predicted proteins
           Arabidopsis thaliana
          Length = 264

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 399 TVRELSDAINDNTVNATPKKVLEGILNDYMDLQYAKETPYTTG 271
           T++E+ D    + VN  P    +G +N+YMD+  + ++ Y  G
Sbjct: 130 TIKEMYDYATSDEVNLEP----QGNVNEYMDVDSSSQSGYGLG 168


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 147  HSPQSKNDGTWDSKLSPVLVLVR 79
            H+  S +DG WD+ LSP+ + ++
Sbjct: 1549 HNEISPDDGIWDNMLSPLFISIK 1571


>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
           At5g37170, At2g05090
          Length = 566

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 178 HKEIVELLLDAVVRDGLVYVINSRAGGKDLLACGVRRLLG 297
           H   VEL + ++  DGL   I      +DL+  G  R+LG
Sbjct: 253 HVPEVELFVKSLPSDGLALTIQDNYVNRDLIKVGQWRILG 292


>At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GI:5924383 from [Daucus
           carota]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 361

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 83  TKTKTGESFESHVPSFFDWGEWSPLFSVSE 172
           T  + G SF  H     +W ++  LF VSE
Sbjct: 130 TNVRFGTSFSPHAEKALEWKDYLSLFFVSE 159


>At1g34180.1 68414.m04239 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM-like protein GI:8809651 from (Arabidopsis
           thaliana)
          Length = 564

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 311 WTFSTPRRRRTPQASRS 261
           W F TPR R+ P A+RS
Sbjct: 74  WFFFTPRNRKYPNAARS 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,219
Number of Sequences: 28952
Number of extensions: 176424
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)