Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o21r
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family pr...    31   0.69 
At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family pr...    31   0.69 
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr...    31   0.69 
At4g20470.1 68417.m02986 hypothetical protein                          29   1.6  
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ...    28   3.7  
At5g27370.1 68418.m03268 hypothetical protein contains Pfam prof...    27   6.4  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   8.5  

>At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 219

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +1

Query: 337 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 516
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 517 ETC 525
            TC
Sbjct: 172 VTC 174


>At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 226

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +1

Query: 337 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 516
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 517 ETC 525
            TC
Sbjct: 172 VTC 174


>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 247

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +1

Query: 337 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 516
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 111 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 170

Query: 517 ETC 525
            TC
Sbjct: 171 VTC 173


>At4g20470.1 68417.m02986 hypothetical protein 
          Length = 140

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 207 VRERAAKRI*LYSTSLG-TLKCIFWTFTCKDTKFLFFRLHKKFVLPIFFN**FAYLLRSF 31
           +  R  +R+   S S G  L C F   +   T F FFR    F L +FF+     LLRS 
Sbjct: 31  LNRRKEERVVTRSRSCGFVLHCTFLLLSSLLTFFFFFRFSSIFSLSLFFSFSQKSLLRSC 90

Query: 30  L 28
           L
Sbjct: 91  L 91


>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 485

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 530 PVQVSCKMKFALLFVLTAIVAVSTNEVADP--RSTDRSNALSIGSITSSDRLLRSFVVSR 357
           P+Q + K +  L  VLT ++A+ T    +P  +    SN   +GS T+ D  + S V   
Sbjct: 86  PIQGNEKPEVNLKNVLTGLIAIVTGRNKNPLDQKNPSSNVSFLGSGTNGDTFVHSSVYIP 145

Query: 356 AATTNSRAVNVRYT 315
           +A        + Y+
Sbjct: 146 SAPPLLEPSGINYS 159


>At5g27370.1 68418.m03268 hypothetical protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 191

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 113 SFCFFVCTKNSFSPFFLINDSRIYYEASLS 24
           SFC   C  +SF+  ++  D RIYY  + S
Sbjct: 55  SFCAAACFFSSFTDSYVGQDGRIYYGIATS 84


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 175 LQYKFGDAKMHILDVYMQRHE 113
           + Y F D KMHILD ++ ++E
Sbjct: 256 VNYCFTDCKMHILDKHVHKYE 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,262
Number of Sequences: 28952
Number of extensions: 179961
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)