Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o21f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    31   0.17 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   4.9  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   6.4  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 348 RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVYL 235
           +F K  PTP  VR  LAN V    +      P  A+Y+
Sbjct: 254 KFAKTSPTPDQVREVLANYVSEPQKLGCYSAPKQAIYV 291


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 513 IRESLIKKNGENEFFVQTKKQKLRVFACKRPEYA 412
           IR+S I K    + F    +QKL   +CKR  Y+
Sbjct: 420 IRKSSIAKTDITKIFDFETEQKLSCLSCKRVRYS 453


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 147 LKALDLSVDLGSATSLVDTATIAVNTNNRANFILQETC 34
           LKALD S+  GS   L D   I  +  N A F    TC
Sbjct: 340 LKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTC 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,956
Number of Sequences: 5004
Number of extensions: 38824
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)