Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o20r
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              256   7e-69
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08)                   32   0.31 
SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)          31   0.40 
SB_49127| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_26932| Best HMM Match : rve (HMM E-Value=3.2)                       31   0.53 
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_8466| Best HMM Match : RNA_pol_Rpb5_N (HMM E-Value=1.3)             30   1.2  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             29   2.2  
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)                    28   5.0  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 28   5.0  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   5.0  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               27   6.6  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  256 bits (627), Expect = 7e-69
 Identities = 113/139 (81%), Positives = 132/139 (94%)
 Frame = -2

Query: 440 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 260 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 81
           E+EVE+++TIM NPRQYKIPDWFLNRQKD  DGKYSQ+ ++ LD+K+REDLERLKKIRAH
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120

Query: 80  RGMRHYWGLRVRGQHTKTT 24
           RG+RHYWGLRVRGQHTKTT
Sbjct: 121 RGLRHYWGLRVRGQHTKTT 139


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = -2

Query: 440 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 339
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -2

Query: 272 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 93
           GEC  ++V     +  +PR  K PD  LN  KD  +GK    T+  + ++L  D ++ K 
Sbjct: 645 GECVTQKV----CVHLDPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKN 699

Query: 92  IRAH 81
            R+H
Sbjct: 700 ARSH 703


>SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08)
          Length = 241

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 128 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTW 21
           S L  DL   +KI  + G RH W L V+   +K +W
Sbjct: 116 SHLEMDLIDFRKIPCNCGRRHLWALHVKDHFSKYSW 151


>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
          Length = 439

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = -2

Query: 200 DWFLNRQKDIVDGKYSQLTSS---NLDSKLREDLERL-KKIRAHRGMRHYWGLRVRGQHT 33
           D F  R+KD   G +   T S    LD+ L+E  ++  +K+  + G++    LR RG+ T
Sbjct: 90  DSFAKRRKDS-PGLFHLNTVSLPKQLDANLKEFFKKYPRKVLQNDGLKLARHLRNRGRPT 148

Query: 32  KTTWQERK 9
           +TTW++ K
Sbjct: 149 ETTWRKYK 156


>SB_49127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 128 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTW 21
           S L  DL   +KI  + G RH W L V    +K +W
Sbjct: 164 SHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSKYSW 199


>SB_26932| Best HMM Match : rve (HMM E-Value=3.2)
          Length = 241

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 128 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTW 21
           S L  DL   +KI  + G RH W L V    +K +W
Sbjct: 135 SHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSKYSW 170


>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -2

Query: 308 LKKADIDLDKRAGECTEEEVEKII-TIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSS-N 135
           LK+  ++L  +A   TE+E+   + ++M+N R  K+    L  + D +  K   LTSS  
Sbjct: 726 LKRVKVEL--QASRQTEQELRSTMHSLMANERSAKVELSQLKAENDSLQHKIQSLTSSRQ 783

Query: 134 LDSKLREDLERLKKIRAHRGMR 69
            D      LER  K+++ R  R
Sbjct: 784 QDRSAISSLER--KLKSERDAR 803


>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 158 YSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTWQERKN 6
           Y  L   +L  + RE L  L+ ++  R  R  WG ++  Q  +  W+  KN
Sbjct: 274 YLSLMRRSLSVEKREALGSLRDVQ--RSWREAWGKKIAVQRAEVEWEAEKN 322


>SB_8466| Best HMM Match : RNA_pol_Rpb5_N (HMM E-Value=1.3)
          Length = 239

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 158 YSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTWQERKN 6
           Y  L   +L  + RE L  L+ ++  R  R  WG ++  Q  +  W+  KN
Sbjct: 186 YLSLMRRSLSVEKREALGSLRDVQ--RSWREAWGKKIAVQRAEVEWEAEKN 234


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 158 YSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTWQERKN 6
           Y  L   +L  + RE L  L+ ++  R  R  WG ++  Q  +  W+  KN
Sbjct: 247 YLSLMRRSLSVEKREALGSLRDVQ--RSWREAWGKKIAVQRAEVEWEAEKN 295


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 69   SHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTIN-NILLPI*EPVWYLILPRIRHDSDNF 245
            +HPSVS +L + +   T   + V  GQ   +  + ++ + + + VWY   P +  D  +F
Sbjct: 874  THPSVSVSLGQSIWYHTHLSVSVSLGQSIWYNTHLSVSVSLCQSVWYHTHPSVLQDVLDF 933

Query: 246  F 248
            +
Sbjct: 934  Y 934


>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 494 FFVSPVLCLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMF 357
           FFV  ++ LGTL+RN  K S      +     + +T  D  R+V F
Sbjct: 226 FFVKMMMTLGTLIRNAIKFSNETKTDYSTKKCLNSTLDDSMRQVQF 271


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 209  KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 69
            K+  W L+     V+ KY +  S + + + LRE+LE +KK+R   G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799


>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
          Length = 1376

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 248  EKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN--LDSKLREDLER 102
            ++I T M    + K+    + ++K+ ++GKY QL S    L+S   +D  R
Sbjct: 1207 DQICTHMHEVEELKLKIARIEKEKEYLEGKYDQLNSDKPVLESSRVDDFSR 1257


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 250 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 360
           T +++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 419 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 240
           +F+H ++     +  KRK +     +       +NI   K DIDL    G CTE+E+ ++
Sbjct: 59  EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109

Query: 239 I 237
           +
Sbjct: 110 V 110


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 152 QLTSS--NLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH--TKTTWQER 12
           QLTS   N+D K+RE LE++KK+    G +      V+ Q    +  W+E+
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKLDKILGEKVKKEKEVKSQRHMNEKMWKEQ 122


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 191 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 96
           L R+K + + KY +   +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,195
Number of Sequences: 59808
Number of extensions: 338364
Number of successful extensions: 1026
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)