Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o20r
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 230 5e-61
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 230 5e-61
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 230 5e-61
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 37 0.009
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,... 34 0.047
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 29 1.8
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 3.1
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 230 bits (562), Expect = 5e-61
Identities = 100/144 (69%), Positives = 127/144 (88%)
Frame = -2
Query: 440 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 260 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 81
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 80 RGMRHYWGLRVRGQHTKTTWQERK 9
RG+RHYWGLRVRGQHTKTT + K
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGK 144
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 230 bits (562), Expect = 5e-61
Identities = 100/144 (69%), Positives = 127/144 (88%)
Frame = -2
Query: 440 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 260 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 81
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 80 RGMRHYWGLRVRGQHTKTTWQERK 9
RG+RHYWGLRVRGQHTKTT + K
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGK 144
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 230 bits (562), Expect = 5e-61
Identities = 100/144 (69%), Positives = 127/144 (88%)
Frame = -2
Query: 440 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 261
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 260 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 81
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 80 RGMRHYWGLRVRGQHTKTTWQERK 9
RG+RHYWGLRVRGQHTKTT + K
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGK 144
>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
(CS13) ribosomal protein S13 precursor, chloroplast
Arabidopsis thaliana, PIR:S59594; identical to cDNA
ribosomal protein S13 GI:1515106
Length = 169
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 110 LERLKKIRAHRGMRHYWGLRVRGQHTKTTWQERK 9
++RLK+I+ +RG+RH GL RGQ TK + K
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK 155
>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
putative similar to putative 30S ribosomal protein S13,
chloroplast precursor GB:P42732 [Arabidopsis thaliana]
Length = 154
Score = 34.3 bits (75), Expect = 0.047
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 134 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTWQERK 9
L ++ +++RL ++ +RG RH GL RGQ T T + +K
Sbjct: 98 LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKK 139
>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 402
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 243 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 338
FFNLFF A +KI +G F ++ +PP+++
Sbjct: 34 FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 164 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 69
G YS + NLD+ L+R+KK+ A G R
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,419
Number of Sequences: 28952
Number of extensions: 234368
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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