Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o19r
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.36
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 1.9
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.9
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 29 2.6
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.9
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 28 7.8
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 7.8
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 472 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDERGKLSRNEGSDVD 624
N+ G L+ I LFR N GS DV K+ DER ++ SDVD
Sbjct: 23 NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDERLDTTKFVESDVD 73
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 334 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 444
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Frame = +1
Query: 301 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 468
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60
Query: 469 SNDHGRNSR 495
DHG R
Sbjct: 61 --DHGGTGR 67
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = +1
Query: 304 RGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRIS 471
R H G DHGG + G H G + GG DH G R G R GR
Sbjct: 11 RDHGG-TGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR-- 67
Query: 472 NDHGRNSR 495
DHG R
Sbjct: 68 -DHGGTGR 74
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +1
Query: 304 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 471
R H G DHGG H G + R +GG DH G R G R G
Sbjct: 60 RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115
Query: 472 NDHGRNSR 495
DHG R
Sbjct: 116 RDHGGTRR 123
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +1
Query: 307 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 471
GH+ SH++ GH GH H N G SH H G++ + G+++ + S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
Query: 472 NDHGRNSRLF 501
++H L+
Sbjct: 370 HEHEPKQDLY 379
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 334 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 489
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 594 LTPLVHILININDAASATPVESVEPEQSNVEE 499
LT H+LIN+ND PV S QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 304 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 483
R H+ R H HGG G+ + GH GG H H G G+ + DG HG
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 301 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 441
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 313 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 423
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 328 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 495
H HGG + T+ H + H+ H HR + + + GR ++DH R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 371 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 505
G+G +++G + G L A + G+G + AG+ ++ + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 328 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 420
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 313 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 417
+G SHD G H + + GH+G SHD G+
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,638
Number of Sequences: 59808
Number of extensions: 214528
Number of successful extensions: 762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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