Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o18r
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.69 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 142 TALNFCIVLNF*YNFATEIQIIRNIQHY 59
           TAL+F + L+F + FAT IQ    + HY
Sbjct: 274 TALDFFVFLSFAFIFATIIQFA--VVHY 299


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 79  LFGFQSQSYIKNSTQCRNLMQLF 147
           +FG    SY   S Q  NL++LF
Sbjct: 70  IFGVIGGSYSSVSLQVANLLRLF 92


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 79  LFGFQSQSYIKNSTQCRNLMQLF 147
           +FG    SY   S Q  NL++LF
Sbjct: 160 IFGVIGGSYSSVSLQVANLLRLF 182


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 55  EYNVEYSELFGFQSQSYIKNS 117
           E N  +  +  F  Q Y+KNS
Sbjct: 335 ESNTMFINILKFLKQKYVKNS 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,598
Number of Sequences: 438
Number of extensions: 1520
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)