Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o18f
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 133 YGTTTRASRKLKIFTKVL 80
           +GTTT   R  K+  K+L
Sbjct: 61  FGTTTNLKRFYKVVEKIL 78


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 282 LYNKIK*VILTFILCQSKDDMKNRF 208
           +Y+ ++   + F LCQ+ DD+   F
Sbjct: 203 VYHLVEISEIHFDLCQAADDLNRYF 227


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 282 LYNKIK*VILTFILCQSKDDMKNRF 208
           +Y+ ++   + F LCQ+ DD+   F
Sbjct: 199 VYHLVEISEIHFDLCQAADDLNRYF 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,350
Number of Sequences: 336
Number of extensions: 1430
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)