Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o18f
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   4.8  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.4  

>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 404 IHNNYLIPVVYEISNNTIILY 466
           IH N LIP ++ +SN+T +LY
Sbjct: 126 IHQN-LIPSLFSVSNSTKLLY 145


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -1

Query: 418 IVIMNIMLNIPNYLDFSRKVILKIQHNAE 332
           I+ ++ +LN+ NY+ ++   + +++HN E
Sbjct: 92  IIHLDQILNLSNYMHYALYCLPRLRHNTE 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,399
Number of Sequences: 5004
Number of extensions: 23462
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)