Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o18f
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.77 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.2  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 TALNFCIVLNF*YNFATEIQIIRNIQHY 403
           TAL+F + L+F + FAT IQ    + HY
Sbjct: 274 TALDFFVFLSFAFIFATIIQFA--VVHY 299


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 419 LIPVVYEISNNTIILYKLLIQ 481
           +I VVY  SNN ++  K L++
Sbjct: 78  IIDVVYNASNNELVRTKTLVK 98


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 383 LFGFQSQSYIKNSTQCRNLMQLF 315
           +FG    SY   S Q  NL++LF
Sbjct: 70  IFGVIGGSYSSVSLQVANLLRLF 92


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 383 LFGFQSQSYIKNSTQCRNLMQLF 315
           +FG    SY   S Q  NL++LF
Sbjct: 160 IFGVIGGSYSSVSLQVANLLRLF 182


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 395 QHYIHNNYLIPVVYEISNNTIILYKLLIQ*ICF 493
           QH IH    I  +Y ++ + I  Y  ++  +CF
Sbjct: 384 QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 395 QHYIHNNYLIPVVYEISNNTIILYKLLIQ*ICF 493
           QH IH    I  +Y ++ + I  Y  ++  +CF
Sbjct: 384 QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 407 EYNVEYSELFGFQSQSYIKNS 345
           E N  +  +  F  Q Y+KNS
Sbjct: 335 ESNTMFINILKFLKQKYVKNS 355


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 395 QHYIHNNYLIPVVYEISNNTIILYKLLIQ*ICF 493
           QH IH    I  +Y ++ + I  Y  ++  +CF
Sbjct: 322 QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,323
Number of Sequences: 438
Number of extensions: 1571
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)