Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o17f
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             210   8e-55
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)                      33   0.17 
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   0.93 
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   3.8  
SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                27   8.7  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  210 bits (512), Expect = 8e-55
 Identities = 95/129 (73%), Positives = 111/129 (86%)
 Frame = +2

Query: 203  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 382
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 383  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 562
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 563  IHDNFEIVE 589
            I+DNF + E
Sbjct: 937  INDNFGLEE 945


>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
          Length = 295

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 45/150 (30%), Positives = 67/150 (44%)
 Frame = +3

Query: 135 VLLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFRMDSLLLTVTKLPFSQKG 314
           +LLLK  L   L +TL+ +L +       +    +L+  L     +LLL +T  P   K 
Sbjct: 34  ILLLKLTLTPLLKLTLTLLLKLTLTLLLKLALTLLLKLTL-----TLLLKLTLAPLL-KL 87

Query: 315 TLRPFHGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KLM 494
           TL P    KL L  L  L ++L L++   L  +  L  LL      +    L +L    +
Sbjct: 88  TLTPLL--KLTLTPLLKLTLTLLLKLALTLLLKLTLTPLLKLTLTPLLKLTLTLLLKLTL 145

Query: 495 TPLLRSSQMLLAPQTVLPHLQRLFMITLKL 584
           TPLL+ +  LL   T+ P L+      LKL
Sbjct: 146 TPLLKLTLTLLLKLTLAPLLKLTLTPLLKL 175


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 45  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 167
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 441 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 527
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 438 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 304
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -2

Query: 367 RLYNIFSPSFSPWNGLRVPF*ENGNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKT 188
           R  N+    F  W GLRV   +  N   V     I N  T L      +I E +   VK 
Sbjct: 6   RAANVTKIPFDGWVGLRVKLKDAANNHEVLVPFLIANQTTDLPIIGFNVIEEIVKGYVKD 65

Query: 187 DERVIYSDHLSSLFNRSTEHQT 122
           ++  + S   SSL++  +++ T
Sbjct: 66  EDNELNSALASSLYDVESDNVT 87


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
 Frame = +3

Query: 231 MAVLRAVLRFRMDSLLLTVTKLP-FSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 407
           +A L+ V+  ++ + L  +T L   +    L P       L +L  L V +PLQ+   LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435

Query: 408 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLPHLQRLFMI 572
             +VL  L   LP  VL+P  +L  L   +   +L   Q+L  PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +3

Query: 138  LLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFR--MDSLLLTVTKLPFSQK 311
            L+L+      L +T SS LT   +     P   +L +V+ F   +  L  +VT+LP S K
Sbjct: 1174 LILETSPYLQLSVTQSSQLTA-SVMHLPFPGKHLLTSVMHFHASVTQLPASVTQLPVSVK 1232

Query: 312  GTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 407
              L         +  L + +  LP+  KHL T
Sbjct: 1233 HLLTSVMHLHASVTHLPASVTQLPVSAKHLPT 1264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,863
Number of Sequences: 59808
Number of extensions: 397599
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)