Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16r
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   1.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 262 QSHLLSMGETMDRPILHQNLVY 327
           ++ LLS G T+D P +H + +Y
Sbjct: 657 ETALLSSGFTLDEPQVHASRIY 678


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 437 YSSLTRLSQGSKCSVKFPGVFKRPKGACRRS 529
           Y +  ++ QG +     PGV   P+  C R+
Sbjct: 30  YGAAVQVPQGGRRRAARPGVVTTPRWGCARA 60


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 704 TFHLTIRYTTFIMAVRD*YFN 642
           TFHLT+R T+ I    D + N
Sbjct: 641 TFHLTVRNTSIIKIPFDVFRN 661


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 224 DWQKNNTRKNNFYKAIC 274
           +W+ + + K  FY  IC
Sbjct: 301 NWKNDKSLKRKFYLTIC 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,259
Number of Sequences: 336
Number of extensions: 3237
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)