Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16r
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964           29   4.8  
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...    24   7.5  

>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
          Length = 586

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 335 KFIYSCYTLNIKKCGFYHFCADSLICLYRSSQYFYSSLTRLSQGSKCSVKFPGVF 499
           +F+  C T  IK  G           L ++ Q+FY++   ++   KCS  F   F
Sbjct: 59  QFLEICSTYTIKGSGAVRLRLFPFSLLVQAKQWFYANRAAVNTWDKCSTAFLSKF 113


>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score = 23.8 bits (49), Expect(2) = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 198 PHCSILSIVRLGHFCAD 148
           P CS L +  LGH C +
Sbjct: 301 PPCSTLFVANLGHSCTE 317



 Score = 22.6 bits (46), Expect(2) = 7.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 339 NLFQIY*ILVQNRP 298
           NLFQIY +L Q++P
Sbjct: 280 NLFQIYYLLEQDQP 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,996
Number of Sequences: 37544
Number of extensions: 283902
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)