Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16r
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    31   0.82 
AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    29   2.5  
AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical ...    29   2.5  
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    28   5.8  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 338 IYFKYTKFWCKIGLSIVSPIDNRWLCKNYFCEYCFFANQIEIHEN 204
           I+  Y  ++C + +  +SPI  +WL +  +  + F A  +E  EN
Sbjct: 608 IFIAYLTYYCLVAMEFISPIQTKWLAEPIY--HDFDAPWLEDSEN 650


>AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 449 LKTNRNTGWIGTNI*GCQRKSGKTHIFLYSRYNMN 345
           LKT++N G I   I G +R +G+  +FL S   +N
Sbjct: 227 LKTDKNEGLIRAKIFGARRANGEVLVFLDSHCEVN 261


>AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 449 LKTNRNTGWIGTNI*GCQRKSGKTHIFLYSRYNMN 345
           LKT++N G I   I G +R +G+  +FL S   +N
Sbjct: 227 LKTDKNEGLIRAKIFGARRANGEVLVFLDSHCEVN 261


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 410 CLYRSSQYFYSSLTRLSQGSKCSVKFPGVFKRPKGACRRSEFFRT 544
           C+++ +Q     L  L +GS CS ++  +F++P   C   + ++T
Sbjct: 49  CVFQCAQENKKDLVLLYEGSCCSARYCNMFEQP--VCSEGQMYQT 91


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 332 NKFIYSCYTLNIKKCGFYH---FCADSLICLYRSSQYFY 439
           N  I+ C T  I+   FYH   + +D    L++SSQ F+
Sbjct: 64  NGIIHQCVTAVIRLRAFYHAIVYASDPCAILFQSSQCFF 102


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 53   NYSIKFN--KSRHLSNTFVTGCLCHGPDARYMRPSAQKWPNLTILS 184
            NY  +FN  K+R+     +TG LC    A Y  PS++     TI S
Sbjct: 915  NYLCRFNAMKNRYYCCASITGDLCPSGKALYKEPSSKAPIRCTISS 960


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,137,065
Number of Sequences: 27780
Number of extensions: 290426
Number of successful extensions: 503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)