Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16r
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.94 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 152 AQKWPNLTILSMEQ*GLSFHEFQFDWQKNNTRKNNFYK 265
           AQ W +  +   E     +   + DW KN  R ++F+K
Sbjct: 89  AQTWKDNRLRLPENMTSEYRLLEVDWLKNMWRPDSFFK 126


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 450 VKDE*KYWLDRYKHM 406
           V+   KYW++R+KH+
Sbjct: 99  VRSAIKYWVERHKHI 113


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 HEFQFDWQKNNTRKNNFYKAICY 277
           + +++++  NN   NN+ K + Y
Sbjct: 92  NNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 HEFQFDWQKNNTRKNNFYKAICY 277
           + +++++  NN   NN+ K + Y
Sbjct: 92  NNYKYNYNNNNYNNNNYNKKLYY 114


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 68  FNKSRHLSNTFVTGCL 115
           FN+S+H+  T  T C+
Sbjct: 844 FNESKHIGFTMYTTCV 859


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,833
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)