Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16f
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    28   0.052
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    28   0.052
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   6.0  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   6.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   6.0  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 0.052
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 439 SSADQDHESQQNRHSQLVMQPEGHILDLRFAKLEPQP 329
           S+  +   S     S+++M P G++L+L   K EP P
Sbjct: 119 STLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNP 155


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 0.052
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 439 SSADQDHESQQNRHSQLVMQPEGHILDLRFAKLEPQP 329
           S+  +   S     S+++M P G++L+L   K EP P
Sbjct: 119 STLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNP 155



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 250 SDYIKTKTSIPHIKRIEDSTKRRVNKKKTGT 158
           S+  KT T    I  I+D  + R+NK  T T
Sbjct: 317 SNQEKTTTESAKISVIQDDAQMRLNKHVTTT 347


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 197 ILDTFNMWN*SFCFY 241
           ++ TFN++   FCFY
Sbjct: 315 VIYTFNLFYLCFCFY 329


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 344 FSKPKIENVAFRLHYQLTVTILLAFVILVCAR 439
           + K   + V+  L  QLT  +   FVI +C R
Sbjct: 218 YYKDTAQLVSLALLMQLTQLVPALFVIYLCGR 249


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 197 ILDTFNMWN*SFCFY 241
           ++ TFN++   FCFY
Sbjct: 271 VIYTFNLFYLCFCFY 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,290
Number of Sequences: 336
Number of extensions: 2487
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)