Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16f
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   1.6  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   3.7  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   3.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   6.4  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   8.5  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.5  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 467 LSDQGVPDHVIQTYCFFMATFTIVRHY 547
           L D+G P+H+I+   +F+   T+ RHY
Sbjct: 800 LRDEGTPNHLIKHNSYFLLP-TVSRHY 825


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 353 PKIENVAFRLHYQLTVTILLAFVILVC 433
           PK+ N  F L+Y L +T+     I++C
Sbjct: 485 PKVANTMFNLNYFLGITVACLSHIIIC 511


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 523 GHEEAVRLNYMVGHTLIRKTFDVIP 449
           GH   +   Y+V HTL++  F V+P
Sbjct: 699 GHSNNINDAYVVIHTLLKVIFSVVP 723


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 520 HEEAVRLNYMVGHTLIRKTFDVIPEILSSADQDHESQQNRHS 395
           HE   +L+ + G   I  T+ V  E +S  ++D ESQ   HS
Sbjct: 350 HESGKQLDLLSGIAAIL-TYPVDEEDISEDEEDEESQNFEHS 390


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 451 PEILSSADQDHESQQNRHSQLVMQPEGHILDLRFAKLEPQPRRETVK 311
           PEI+   +   E+   +  Q ++Q  G   DL+   L+ + ++E++K
Sbjct: 20  PEIIGGQNNFLENNLQQIFQKIIQERGPFRDLKEEDLQKELQKESIK 66


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 450 PKYSLAQTRITKASKIVTVSW*CSLKATFSIFGLLNWNRSRGERLLSDATNILK 289
           P   + QT+I K SKI +        ATF  F  L+WN  R   +     NI K
Sbjct: 374 PDLVVIQTKIRKESKIPS-------NATFLYFWALSWNTPRVVGVPKKGFNIQK 420


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 458  IKCLSDQGVPDHVIQTYCFFMATFTIVRHYNESLLQG 568
            +  L +QGV  ++   Y F+ + FT V  +   +L G
Sbjct: 1062 VAILREQGVNGYLEMAYAFYASGFTAVDVHMTDILSG 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,048
Number of Sequences: 5004
Number of extensions: 40917
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)