Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16f
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    30   1.2  
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54...    27   8.7  

>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 425 LVCAREYFGDHIKCLSDQGVPDHVIQTYCFFM----ATFTIVRHYNESLLQGE 571
           +V A   F DH K    +G+    ++T CFFM    AT  ++  +N  +L GE
Sbjct: 206 VVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFIDDATHRVLASHN--ILAGE 256


>02_01_0077 -
           546033-546223,546314-546566,546635-546865,547165-547331,
           547369-548008
          Length = 493

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 355 EDRECGLQAALPADCDDFAGFRDPGLR-*RVFRGSHQMSFGSG 480
           ED+ CG  A          GFRDP LR  ++ RG    S GSG
Sbjct: 218 EDKLCGYAAEKLGIARSIPGFRDPRLRSGQLRRGVSFASAGSG 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,635
Number of Sequences: 37544
Number of extensions: 269655
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)