Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16f
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)              28   5.0  
SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)                  27   8.8  
SB_29029| Best HMM Match : C1_1 (HMM E-Value=1)                        27   8.8  
SB_5263| Best HMM Match : C1_1 (HMM E-Value=1)                         27   8.8  

>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 410 LAFVILVCAREYFGDHIKCLSDQGVPDHVIQTYC 511
           LA V LVC  +YF D++ CL   G+  H+ Q  C
Sbjct: 225 LAIVFLVCG-QYFKDYLNCLGCIGL-YHLSQKQC 256


>SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 2   ICFLHSDA---AVRLSV-IIVFVYLIFLYLRDTVSYSAFDIRATNASPFL 139
           I F+ ++A    + LS+ +I++ Y ++ YLR T+  +  D+    A PF+
Sbjct: 8   IAFVSTNALSLVLALSICVILYAYFVYPYLRSTMIATTGDLPGPTALPFI 57


>SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)
          Length = 190

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 452 DHIKCLSDQGVPDHVIQTYCFFMATFTIVRHYNES 556
           DH+   S   V +H++ T C F +TF  +R   E+
Sbjct: 92  DHVAHKSSVHVTNHILATLCDFTSTFPSLRRAIEA 126


>SB_29029| Best HMM Match : C1_1 (HMM E-Value=1)
          Length = 250

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 410 LAFVILVCAREYFGDHIKCLSDQGV 484
           LA V LVC  +YF D++ CL   G+
Sbjct: 219 LAIVFLVCG-QYFKDYLNCLGCMGL 242


>SB_5263| Best HMM Match : C1_1 (HMM E-Value=1)
          Length = 407

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 410 LAFVILVCAREYFGDHIKCLSDQGV 484
           LA V LVC  +YF D++ CL   G+
Sbjct: 331 LAIVFLVCG-QYFKDYLNCLGCMGL 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,482,226
Number of Sequences: 59808
Number of extensions: 317647
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)