Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o16f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   3.1  
At4g08200.1 68417.m01355 hypothetical protein                          28   4.1  
At3g13100.1 68416.m01640 ABC transporter family protein similar ...    27   7.2  
At1g70080.1 68414.m08063 terpene synthase/cyclase family protein...    27   7.2  

>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 478 LIRKTFDVIPEILSSADQDHESQQNRHSQLVMQPEGHILDLRFAKLEPQPRRETV 314
           LIRKTF  +P      D   +S  N H  L        L LR  K +P+   +++
Sbjct: 224 LIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFVLSAKKLHLRGIKFKPRKNTDSI 278


>At4g08200.1 68417.m01355 hypothetical protein
          Length = 202

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 493 MVGHTLIRKTFDVIPEILSSADQDHESQQNRHSQLVMQPEGHILDLR 353
           M  H  +RK+  + P+  ++ +QD   Q +   ++ +Q +G I D R
Sbjct: 137 MALHNFVRKSNILDPDFEANWEQDDNHQPSLKEEVEVQDDGQIFDSR 183


>At3g13100.1 68416.m01640 ABC transporter family protein similar to
            ATP-binding cassette transporter MRP8 GI:18031899 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1493

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 290  FKMLVASLNSLSPRLRFQFSKPKIENVAFRLHYQLTVTILLAFVILVCARE 442
            F+  +  LN    RLRF  +   +E + FRL    TV   L+ VILV   E
Sbjct: 1121 FRTDIMRLNDCYSRLRFH-AISAMEWLCFRLDLLSTVAFALSLVILVSVPE 1170


>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
           similar to (+)-delta-cadinene synthase [Gossypium
           hirsutum][GI:8389329], sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 611

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -2

Query: 450 PKYSLAQTRITKASKIVTVSW*CSLKATFSIFGLLNWNRSRG---ERLLSDATNILKDYT 280
           P+YS A+  + K+  +V +     +  TF ++G ++  +S     ER  SDA ++L DY 
Sbjct: 343 PQYSAARIMLAKSIILVDI-----VDNTFDVYGTIDEVKSLVQAIERWDSDAVDVLPDYL 397

Query: 279 QLTY 268
           ++ +
Sbjct: 398 KVVF 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,914
Number of Sequences: 28952
Number of extensions: 213875
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)