Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o15r
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   3e-61
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               64   1e-10
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 54   9e-08
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.1  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  231 bits (566), Expect = 3e-61
 Identities = 121/228 (53%), Positives = 147/228 (64%), Gaps = 6/228 (2%)
 Frame = -2

Query: 680 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 501
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 500 SYT------PAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXX 339
           SY       P E+K+  +   P                    ++DLFGS           
Sbjct: 61  SYGEGKQNFPGEKKS-VESFGP--AGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAAR 117

Query: 338 XXXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKL 159
               RLKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKL
Sbjct: 118 IRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKL 177

Query: 158 VPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 15
           VP+ YGI KLQI  V+EDDK+S D L E+I +FEDFVQSVDIAAFNKI
Sbjct: 178 VPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSVDIAAFNKI 225


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
 Frame = -2

Query: 323 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 156
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 155 PVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 51
            + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 120 EIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = -2

Query: 599 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 495
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = -2

Query: 164 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 51
           KLV + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 647 LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 552
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 461 CPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQ 604
           CP       PE    F  T+ +  EG     CQ+  IL H+++ EC++
Sbjct: 568 CPPFGISSAPEV---FQRTMSMTLEGLEGVVCQMDDILIHEVQDECVR 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,763,553
Number of Sequences: 59808
Number of extensions: 413025
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)