Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o15f
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   115   4e-27
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.5  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   5.8  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   5.8  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   7.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   7.7  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.7  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  115 bits (277), Expect = 4e-27
 Identities = 67/171 (39%), Positives = 86/171 (50%), Gaps = 1/171 (0%)
 Frame = +1

Query: 52  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 228
           M   D+ +  GL  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 229 ASYTPAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 408
           A+Y  A        T P                     +DLFGS                
Sbjct: 61  ATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERV 112

Query: 409 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWG 561
            + Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWG 162


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 273 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 163
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 85   LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 243
            L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 28  KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 126
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 284 PPVLNPRLPPQQRKTTMTT 340
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 85  LNDLNQYLAEKSYVSGYTPSQADVQVF 165
           L+ +++YL   ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 424 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 519
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 223 DYTIVVRGEG*RPAPCQLAQILEHQLE 143
           +Y +VV G G  P  C +   L  QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,872
Number of Sequences: 5004
Number of extensions: 37708
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)