Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o14r
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    27   1.9  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   2.5  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    27   3.3  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    27   3.3  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   3.3  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   5.7  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   7.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.6  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   10.0 

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 659 LINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 540
           ++ V G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 80  IVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 286 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 375
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 238 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 336
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 665 RRLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDI-FRLGIHDI 525
           +RLI V G+++ D   P  +M    ++  G+ F + +DI  R  +H I
Sbjct: 67  QRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRI 114


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 665 RRLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDI-FRLGIHDI 525
           +RLI V G+++ D   P  +M    ++  G+ F + +DI  R  +H I
Sbjct: 67  QRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRI 114


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHDI 525
           +I VLG +         + QTF L    + ++V +DIFR    D+
Sbjct: 95  VIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFRFLREDV 139


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 665 RRLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDI-FRLGIHDI 525
           +RLI V G+++ D   P  +M    +   G+ F + +DI  R  +H I
Sbjct: 67  QRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRI 114


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 532 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLI 657
           W  + K  C +   SP G N+++ +YR    +  F++P   I
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAI 424


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 414 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 512
           E +   +M  +L  +LY ISN  LSI+   + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 513 KDRHNTKKCLT*NLI 469
           KD HNTKKCL   LI
Sbjct: 259 KDDHNTKKCLAQLLI 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,205
Number of Sequences: 5004
Number of extensions: 58920
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)