Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o14r
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  35   0.069
SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)                      29   3.4  

>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLGD--SFYVQHDIFR 543
           ++ V G L  +  P   +MQTFVL P  D   +YV +DIFR
Sbjct: 90  VVQVSGELSNNGQPMRKFMQTFVLAPGEDIRKYYVHNDIFR 130


>SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 425 IIFFLYLFRQRIYEIERTRRL*NYDNDRFSDRTG*SKMRIWFSLHRKW 282
           I + LY+ +QR+ +IE  + + N DND  + +   +K+R +     K+
Sbjct: 20  IKYILYIIKQRLEDIEFQKWISNVDNDNRNKQGQSNKLRTYRKFKSKY 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,240
Number of Sequences: 59808
Number of extensions: 404128
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)