Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o14r
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07315-1|CAA30278.1|  127|Homo sapiens protein ( Human gene for ...    43   0.001
U43939-1|AAA85905.1|  127|Homo sapiens nuclear transport factor ...    43   0.001
CR456937-1|CAG33218.1|  127|Homo sapiens NUTF2 protein.                43   0.001
BC002348-1|AAH02348.1|  127|Homo sapiens nuclear transport facto...    43   0.001
CR536535-1|CAG38772.1|  466|Homo sapiens G3BP protein.                 37   0.075
BC011731-1|AAH11731.1|  449|Homo sapiens GTPase activating prote...    36   0.099
AF145284-1|AAD51932.1|  482|Homo sapiens RNA-binding protein iso...    36   0.099
AF053535-1|AAC95292.1|  449|Homo sapiens ras-GAP/RNA binding pro...    36   0.099
AF051311-1|AAC15705.1|  449|Homo sapiens Ras-GAP SH3 binding pro...    36   0.099
AB014560-1|BAA31635.2|  490|Homo sapiens KIAA0660 protein protein.     36   0.099
U32519-1|AAB07787.1|  466|Homo sapiens GAP SH3 binding protein p...    35   0.30 
BT019384-1|AAV38191.1|  466|Homo sapiens Ras-GTPase-activating p...    35   0.30 
BC108278-1|AAI08279.1|  466|Homo sapiens GTPase activating prote...    35   0.30 
BC006997-1|AAH06997.1|  466|Homo sapiens GTPase activating prote...    35   0.30 
AK222606-1|BAD96326.1|  466|Homo sapiens Ras-GTPase-activating p...    35   0.30 

>X07315-1|CAA30278.1|  127|Homo sapiens protein ( Human gene for
           PP15 (placental protein 15). ).
          Length = 127

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -3

Query: 650 VLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHD 528
           V+G+LK DEDP   + Q F+LK + D++   +D+FRL +H+
Sbjct: 85  VVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125


>U43939-1|AAA85905.1|  127|Homo sapiens nuclear transport factor 2
           protein.
          Length = 127

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -3

Query: 650 VLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHD 528
           V+G+LK DEDP   + Q F+LK + D++   +D+FRL +H+
Sbjct: 85  VVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125


>CR456937-1|CAG33218.1|  127|Homo sapiens NUTF2 protein.
          Length = 127

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -3

Query: 650 VLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHD 528
           V+G+LK DEDP   + Q F+LK + D++   +D+FRL +H+
Sbjct: 85  VVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125


>BC002348-1|AAH02348.1|  127|Homo sapiens nuclear transport factor 2
           protein.
          Length = 127

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -3

Query: 650 VLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHD 528
           V+G+LK DEDP   + Q F+LK + D++   +D+FRL +H+
Sbjct: 85  VVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125


>CR536535-1|CAG38772.1|  466|Homo sapiens G3BP protein.
          Length = 466

 Score = 36.7 bits (81), Expect = 0.075
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L  D      +MQTFVL P G   + FYV +DIFR
Sbjct: 91  VVQVMGLLSNDNQALRRFMQTFVLAPEGSVANKFYVHNDIFR 132


>BC011731-1|AAH11731.1|  449|Homo sapiens GTPase activating protein
           (SH3 domain) binding protein 2 protein.
          Length = 449

 Score = 36.3 bits (80), Expect = 0.099
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L     P   +MQTFVL P G   + FYV +D+FR
Sbjct: 91  VVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFR 132


>AF145284-1|AAD51932.1|  482|Homo sapiens RNA-binding protein
           isoform G3BP-2a protein.
          Length = 482

 Score = 36.3 bits (80), Expect = 0.099
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L     P   +MQTFVL P G   + FYV +D+FR
Sbjct: 91  VVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFR 132


>AF053535-1|AAC95292.1|  449|Homo sapiens ras-GAP/RNA binding
           protein G3BP2 protein.
          Length = 449

 Score = 36.3 bits (80), Expect = 0.099
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L     P   +MQTFVL P G   + FYV +D+FR
Sbjct: 91  VVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFR 132


>AF051311-1|AAC15705.1|  449|Homo sapiens Ras-GAP SH3 binding
           protein protein.
          Length = 449

 Score = 36.3 bits (80), Expect = 0.099
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L     P   +MQTFVL P G   + FYV +D+FR
Sbjct: 91  VVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFR 132


>AB014560-1|BAA31635.2|  490|Homo sapiens KIAA0660 protein protein.
          Length = 490

 Score = 36.3 bits (80), Expect = 0.099
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L     P   +MQTFVL P G   + FYV +D+FR
Sbjct: 99  VVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFR 140


>U32519-1|AAB07787.1|  466|Homo sapiens GAP SH3 binding protein
           protein.
          Length = 466

 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L  +      +MQTFVL P G   + FYV +DIFR
Sbjct: 91  VVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFR 132


>BT019384-1|AAV38191.1|  466|Homo sapiens Ras-GTPase-activating
           protein SH3-domain-binding protein protein.
          Length = 466

 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L  +      +MQTFVL P G   + FYV +DIFR
Sbjct: 91  VVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFR 132


>BC108278-1|AAI08279.1|  466|Homo sapiens GTPase activating protein
           (SH3 domain) binding protein 1 protein.
          Length = 466

 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L  +      +MQTFVL P G   + FYV +DIFR
Sbjct: 91  VVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFR 132


>BC006997-1|AAH06997.1|  466|Homo sapiens GTPase activating protein
           (SH3 domain) binding protein 1 protein.
          Length = 466

 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L  +      +MQTFVL P G   + FYV +DIFR
Sbjct: 91  VVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFR 132


>AK222606-1|BAD96326.1|  466|Homo sapiens Ras-GTPase-activating
           protein SH3-domain-binding protein variant protein.
          Length = 466

 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLG---DSFYVQHDIFR 543
           ++ V+G L  +      +MQTFVL P G   + FYV +DIFR
Sbjct: 91  VVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFR 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,411,825
Number of Sequences: 237096
Number of extensions: 1766386
Number of successful extensions: 2531
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)