Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o14r
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    45   6e-05
AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    28   7.0  
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    28   7.0  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = -3

Query: 656 INVLGRLKCDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRLGIHD 528
           + VLG+LK DEDP + + Q F+L+P    S+++ ++IFRL +H+
Sbjct: 89  VMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIFRLDLHN 132


>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 60  QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRII 206
           Q +    S  +P     L +  E ++  + +FK +ID  KN   +N+ I
Sbjct: 201 QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFI 249


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 60  QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRII 206
           Q +    S  +P     L +  E ++  + +FK +ID  KN   +N+ I
Sbjct: 201 QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFI 249


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 227 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 105
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 227 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 105
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,598,056
Number of Sequences: 27780
Number of extensions: 327471
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)