Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o14r
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil...    29   2.1  
At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family pr...    29   2.1  
At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family pr...    29   2.1  
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    29   3.8  
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    29   3.8  
At5g57330.1 68418.m07161 aldose 1-epimerase family protein conta...    29   3.8  
At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si...    28   5.0  

>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 428

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 650 VLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 543
           V G L   E     + Q+F L PL  S++V +D+FR
Sbjct: 95  VTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLNDVFR 130


>At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile:PF00010 helix-loop-helix
           DNA-binding domain
          Length = 420

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 327 RVI*NENLVFITQKMEINCYMFVNEQIIKMKNRFHY 220
           R+I +E  + I QK +INC +FV++ + +++   H+
Sbjct: 328 RIIDDEVTIKIVQKKKINCLLFVSKVVDQLELDLHH 363


>At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile:PF00010 helix-loop-helix
           DNA-binding domain
          Length = 420

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 327 RVI*NENLVFITQKMEINCYMFVNEQIIKMKNRFHY 220
           R+I +E  + I QK +INC +FV++ + +++   H+
Sbjct: 328 RIIDDEVTIKIVQKKKINCLLFVSKVVDQLELDLHH 363


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 543
           ++ V GRL  +++    + Q+F L P    ++V +D+FR
Sbjct: 92  IVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 130


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 659 LINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 543
           ++ V GRL  +++    + Q+F L P    ++V +D+FR
Sbjct: 92  IVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 130


>At5g57330.1 68418.m07161 aldose 1-epimerase family protein contains
           Pfam profile PF01263 Aldose 1-epimerase
          Length = 312

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 307 FGFHYT----ENGDKLLHVCKRTNYKNEKPLSLLLPLEIMRF 194
           +G H T    ENG++LLH+  +  +K  KP+   +PL   +F
Sbjct: 35  YGSHVTSWKNENGEELLHLSSKAIFKPPKPIRGGIPLCFPQF 76


>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase precursor SP:P43077 from
           [Candida albicans]
          Length = 580

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 196 IALSPRVTIMKAVFHFYNLFVYKHVTIYLHFLCNENQILILDYPVRSLNR 345
           IALSP  TI+ A  H Y   +   VT Y + + +EN   ++ YPV+ + R
Sbjct: 48  IALSPNFTIL-APEHQY---LSASVTRYHNLIRSENYSPLISYPVKLMKR 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,022
Number of Sequences: 28952
Number of extensions: 287165
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)