Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o14f
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 4e-15
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 62 2e-10
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 27 6.9
SB_51812| Best HMM Match : LRRCT (HMM E-Value=2e-05) 27 6.9
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 78.2 bits (184), Expect = 4e-15
Identities = 39/114 (34%), Positives = 70/114 (61%)
Frame = +2
Query: 35 LNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVET 214
L+ +A + + V T ++ ++ + K FV+ YY++FD + R NL +Y
Sbjct: 90 LDVAASVEVCVNSTQFFNSFIETMSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PG 146
Query: 215 SFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLK 376
S +TFEG Q+QG I+ KL S+ FQ++ ++T+ D+QP+ +GG+++ V+G+LK
Sbjct: 147 SMLTFEGAQIQGTEAIVAKLVSMPFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 62.5 bits (145), Expect = 2e-10
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Frame = +2
Query: 110 PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQ---LQGAVKIMEK 271
P +G+ FV+QYYTL + + L Y + F+ G Q + G I EK
Sbjct: 6 PSPQCVGREFVRQYYTLLNQ--EPLKLHRFYTKHSWFLHGRAENGPQENPIMGQEAIYEK 63
Query: 272 LNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD--SFY 445
+ L F + VDS GV++ V G L + P +MQTFVL P D +Y
Sbjct: 64 IKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIRKYY 123
Query: 446 VQHDIFR 466
V +DIFR
Sbjct: 124 VHNDIFR 130
>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 387 SSSHFNLPRTLIKTPPSNIGWESTAVTILVIF*KVKLFNFSIIL 256
+ + FN R PPSN+ W AV + ++F VK N+ + L
Sbjct: 21 NDNFFNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFLNYRLHL 64
>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 144 NNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLL 257
N + H +M+ +G L CT+++ H NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352
>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 202 VHINKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKIQDVTN 23
+ ++ + PL + + LH DC+ ++H D C N PN +RK+ D N
Sbjct: 139 IDVSGVMPLQQTMSPSEDCLH----DCVDESSDKHTD-----CQRNNVPNRTRKLSDTEN 189
>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 215 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 132
KF C Y +++ VE DH+ + IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445
>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 116 YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEG-VQLQGAVKIMEKLNSLTFQ 292
Y I + F+Q Y + P + N N TSF +G Q ++ +++ TF
Sbjct: 171 YGVIIRSFLQLVYLVLRVPCRSLQFTNASNKYTSFGQIQGDAQPSERQSLLRSISNQTFY 230
Query: 293 KITRIVT 313
T+ V+
Sbjct: 231 SSTQCVS 237
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = -1
Query: 173 PDHRTMCNIVAQNL---YRLHRTAD*APFRLRCVYLSHQQKAQFQPKNSRCDELTKRGLK 3
PD C+ +N+ Y D +RC Y + + KN RCD K+ L+
Sbjct: 768 PDKNMRCDYPDKNMRCDYPDKNRCDYPDKNMRCDYPDKNMRCDYPDKNMRCDYPDKKQLE 827
>SB_51812| Best HMM Match : LRRCT (HMM E-Value=2e-05)
Length = 232
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = -1
Query: 173 PDHRTMCNIVAQNL---YRLHRTAD*APFRLRCVYLSHQQKAQFQPKNSRCDELTKRGLK 3
PD C+ +N+ Y D +RC Y + + KN RCD K+ L+
Sbjct: 156 PDKNMRCDYPDKNMRCDYPDKNRCDYPDKNMRCDYPDKNMRCDYPDKNMRCDYPDKKQLE 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,940
Number of Sequences: 59808
Number of extensions: 354780
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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