Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o14f
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75546-2|CAA99890.1| 133|Caenorhabditis elegans Hypothetical pr... 125 2e-29
AC024852-3|ABQ13048.1| 131|Caenorhabditis elegans Ntf2-related ... 36 0.023
AF156960-1|AAD54945.1| 137|Caenorhabditis elegans NTF2-related ... 33 0.092
AC024852-2|AAK66028.1| 137|Caenorhabditis elegans Ntf2-related ... 33 0.092
Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical pr... 29 1.5
U53139-10|AAK18937.1| 381|Caenorhabditis elegans Serpentine rec... 28 3.4
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 27 8.0
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z75546-2|CAA99890.1| 133|Caenorhabditis elegans Hypothetical
protein R05D11.3 protein.
Length = 133
Score = 125 bits (301), Expect = 2e-29
Identities = 58/131 (44%), Positives = 89/131 (67%), Gaps = 4/131 (3%)
Frame = +2
Query: 98 MALNPQYDAIGKGFVQQYYTLFD--DPAQRAN-LVNMYNVETSFMTFEGVQLQGAVKIME 268
M+ NP Y+++ K F+Q YY+ FD D RA L ++Y+ E S+MTFEG Q +G I++
Sbjct: 1 MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQ 60
Query: 269 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFY 445
K +L F KI R +T +DSQP++DG + + VLG+LK DEDP + + Q F+L+P S++
Sbjct: 61 KFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYF 120
Query: 446 VQHDIFRLGIH 478
+ ++IFRL +H
Sbjct: 121 IGNEIFRLDLH 131
>AC024852-3|ABQ13048.1| 131|Caenorhabditis elegans Ntf2-related
export protein protein1, isoform b protein.
Length = 131
Score = 35.5 bits (78), Expect = 0.023
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Frame = +2
Query: 131 KGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEK----LNSLTFQKI 298
K F+ YY + D ++ + + S + G + G +K + + SL Q++
Sbjct: 21 KKFMDVYYDVMDRKREK---IGFLYTQVSNAVWNGNPINGFMKALPSTQHDIQSLDAQRL 77
Query: 299 TRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 466
VT S GG+L+NV G + D D + QT +L + V+ D FR
Sbjct: 78 PEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128
>AF156960-1|AAD54945.1| 137|Caenorhabditis elegans NTF2-related
export protein NXT1 protein.
Length = 137
Score = 33.5 bits (73), Expect = 0.092
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = +2
Query: 131 KGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIV 310
K F+ YY + D ++ + + S + G + G I E + +L + +
Sbjct: 21 KKFMDVYYDVMDRKREK---IGFLYTQVSNAVWNGNPINGYDSICEFMKALPSTQ--HDI 75
Query: 311 TAVDSQPM-------FDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 466
++D+Q + GG+L+NV G + D D + QT +L + V+ D FR
Sbjct: 76 QSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134
>AC024852-2|AAK66028.1| 137|Caenorhabditis elegans Ntf2-related
export protein protein1, isoform a protein.
Length = 137
Score = 33.5 bits (73), Expect = 0.092
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = +2
Query: 131 KGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIV 310
K F+ YY + D ++ + + S + G + G I E + +L + +
Sbjct: 21 KKFMDVYYDVMDRKREK---IGFLYTQVSNAVWNGNPINGYDSICEFMKALPSTQ--HDI 75
Query: 311 TAVDSQPM-------FDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 466
++D+Q + GG+L+NV G + D D + QT +L + V+ D FR
Sbjct: 76 QSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134
>Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical
protein C15H11.3 protein.
Length = 628
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 107 NPQYDAIGKGFVQQYYTLFDDP---AQRANLVNMYNVETSFMTFEGVQLQGA 253
NPQ + + FV Y+ +D P R NL N Y+ + S + L+G+
Sbjct: 359 NPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYDADASTFSLTIEHLRGS 410
>U53139-10|AAK18937.1| 381|Caenorhabditis elegans Serpentine
receptor, class w protein69 protein.
Length = 381
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 29 HILNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLF 163
H SA G+ + + R +++ ALNP+YDA+ K Y ++F
Sbjct: 121 HSRRLSAWYGVMMALM-RFLIVKFALNPKYDALSKPLF-SYLSMF 163
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 356 NVLGRLKCDEDPPHLYM 406
N++G LKC E P H+Y+
Sbjct: 70 NLVGLLKCTETPTHVYL 86
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 356 NVLGRLKCDEDPPHLYM 406
N++G LKC E P H+Y+
Sbjct: 70 NLVGLLKCTETPTHVYL 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,012
Number of Sequences: 27780
Number of extensions: 267809
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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