Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o13f
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    30   1.0  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   1.8  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    29   2.4  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   2.4  
At3g13410.1 68416.m01686 expressed protein                             29   2.4  
At4g01960.1 68417.m00261 expressed protein                             28   4.1  
At2g45680.1 68415.m05680 TCP family transcription factor, putati...    28   5.4  
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    28   5.4  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   5.4  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    27   7.2  
At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    27   7.2  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   7.2  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    27   9.5  

>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 558 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 394
           E  +E   DI N    CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -1

Query: 596 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 420
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 419 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 327
             L       +  S++ TD + +   R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = -3

Query: 522 SYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 343
           S   S V D + +   D   S  +      +SG    Q   E   FSFS  D C   GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412

Query: 342 QD*VESGADVADTTQMQGAE 283
                 G+  +DT ++ G E
Sbjct: 413 ----SVGSSSSDTVKVDGKE 428


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 157 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 324
           +GE +  +D L R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 582 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 451
           GWSNF   E  LE   D+A  +   ++  +DV  + +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At4g01960.1 68417.m00261 expressed protein
          Length = 236

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 567 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 406
           + EE DL+V  +      + ++T N V  EGD S ++ N V  G+ S  GSE+  D
Sbjct: 6   SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60


>At2g45680.1 68415.m05680 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) [Oryza sativa]
          Length = 356

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/110 (22%), Positives = 46/110 (41%)
 Frame = -1

Query: 578 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 399
           G  S  + + W L+   P +IAA  + T+   A          T + A     ++L  + 
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166

Query: 398 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 249
           + R S ++E  D     +A + L+ + T  T +  + L SS +     P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 588 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 451
           +DG+ N A E+ +  V   + N+Y  + V  N+V+      G+LS+
Sbjct: 44  LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 516  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 397
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 540 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 382
           R  I+N+   ++ T+N+  C G  S  L ++++    +G+   Q +++   FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527


>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 567 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 388
           AS E   EV   I   Y   D+ D DV+ E    G  S+ VLK  +   E  Q+A   ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 253 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 345
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 91  DVDFEPNSQRILDIVISNLFNEIGEL 168
           D D+E + QR +D+++    N +G+L
Sbjct: 249 DKDYEDSKQREIDVLVKKTMNVLGDL 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,181
Number of Sequences: 28952
Number of extensions: 216878
Number of successful extensions: 670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)