Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12r
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.77 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.77 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   1.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.2  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 282 QITPESDASLKKIVTDFLAT 223
           ++TP  DAS K+I T F +T
Sbjct: 108 RLTPSKDASSKRIXTAFTST 127


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 531 GQKLRPHGTEPIPASWNRPPAS 596
           G  LR +G EP+P++   PP S
Sbjct: 197 GYGLRNYGPEPVPSTPYPPPGS 218


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/38 (18%), Positives = 19/38 (50%)
 Frame = -3

Query: 563 WLSTVRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKD 450
           W +  R +L   + +TW P + +   ++ ++  S  ++
Sbjct: 134 WFANARRRLKKENKMTWEPKNKTDDDDDALVSDSDDRE 171


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = +3

Query: 72  YYSSHESTVDITAVLPSGEAFNLIWDCSTNSSFEIS 179
           +YS++     +T V  + +    +W+ S   SF ++
Sbjct: 131 FYSAYLVADKVTVVSKNNDDEQYVWESSAGGSFTVT 166


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 506 LHSSCSTEECVLLSSSSKDNMCPWLLRN 423
           L  S S E C L+   +     PW  R+
Sbjct: 172 LRQSSSLEHCTLIGEDNISAKNPWFPRH 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,711
Number of Sequences: 336
Number of extensions: 3176
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)