Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12r
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   204   1e-53
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    28   1.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   4.4  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   4.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   5.9  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   7.8  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   7.8  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  204 bits (497), Expect = 1e-53
 Identities = 95/156 (60%), Positives = 127/156 (81%)
 Frame = -2

Query: 687 ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA 508
           E+ELF+KGIRPAINVGLSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDLDA
Sbjct: 381 ESELFFKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDA 440

Query: 507 ATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHI 328
            T+  L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+   ++  FE +F  ++
Sbjct: 441 GTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYL 500

Query: 327 KTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 220
           ++S   ++  I K+G ++  ++ SLK ++ +FL++F
Sbjct: 501 RSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLSSF 536


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -2

Query: 657 PAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG- 481
           P  N+GL    V     T+  +   G +  E   Y  +  FA+  +D+D   +QL+  G 
Sbjct: 337 PHTNIGLMSKLV-----TQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGD 391

Query: 480 -MRLTELLKQGQYVPMAIEEQVAI 412
             ++T+L  + +      E  +A+
Sbjct: 392 TEKMTDLFSKSRLYRYFFETSIAV 415


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 384  DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 229
            DK+DP    AF+K  T ++ TS       + KD   T  S   L  I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = -2

Query: 387 LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 238
           L++LDP KIT  + E    I +        QG  S++ K  +  P+  A     VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 551 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 447
           +R    P   L W PLH +  +    LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 301  GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 435
            G+   + S+ +  +FLL   DF G +L+  T     +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 36  YQHSIQPI*MLYYYSSH 86
           Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 397 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 531
           D  ++ G+   + +  I+SLL+ELS   S  E    S +Q+ +E+
Sbjct: 65  DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/89 (23%), Positives = 42/89 (47%)
 Frame = +1

Query: 301 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTH 480
           G K  V   ++L+ +L   ++    +LV  ++   +   D   N+  H++  LE LS  +
Sbjct: 290 GHKGTVEEVELLNSYLRSKAEVA--KLVGKSSFADLQLIDKMANAPKHVVEFLENLSLKN 347

Query: 481 SSVEQLLCSGIQVRTELGKSCDLTVLSQF 567
           SSV + + + + +  +  K  +L  L  F
Sbjct: 348 SSVLKKILNNLALMKK--KELNLNFLPSF 374


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 391 SPRQAGPLQNHCLREGIHSTHQN*PPGSS 305
           SPRQA P ++  L  G++S   + PP S+
Sbjct: 301 SPRQARPRRSVSLATGLNSPSVSKPPSSA 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,935
Number of Sequences: 5004
Number of extensions: 50960
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)