Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12r
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076...    29   4.6  
06_01_0651 + 4711369-4712431,4713069-4713763                           28   6.0  
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797...    28   6.0  
02_02_0741 + 13590883-13591582,13591955-13592250                       28   6.0  
01_06_1261 - 35826513-35828941,35829201-35829294                       28   6.0  
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    28   8.0  
05_07_0101 - 27690927-27691208,27691695-27692474                       28   8.0  

>11_05_0078 -
           18906900-18907082,18907104-18907337,18907429-18907653,
           18907739-18907909,18907994-18908109,18908215-18908369,
           18908450-18908573,18909007-18909107,18909215-18909297,
           18909383-18909607,18909694-18909810,18910488-18910640
          Length = 628

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
 Frame = -2

Query: 630 SRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELL-KQ 454
           S  G AA T A  + AGS+    A+    A    FG+             M ++E L K 
Sbjct: 309 SSAGPAASTSAGSETAGSITYPAARCGVTALRTTFGTVARTGV-------MSISESLDKL 361

Query: 453 GQYVPMAIEEQVAIIYCGVRGHLDKLDP-SKITAFEKEFTQHIKTSHQGLLSTIAKDGQI 277
           G +   AI+   A++   +RG  D  DP S+  A E  F   I+    G L   + + ++
Sbjct: 362 GPFCRSAID--CAVVLDAIRGK-DAGDPSSREVAIEDPFHVDIRQLTVGYLD--SAEMEV 416

Query: 276 TPESDASLKKIVTDFLATFTQSQ*TSLRNLTCD 178
                A   K+V  F   +T     S+ N+T D
Sbjct: 417 VHVLSAKGVKLV-PFKLNYTVQSVQSILNITMD 448


>06_01_0651 + 4711369-4712431,4713069-4713763
          Length = 585

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 456 QGQYVPMAIEEQVAIIY-CGVRGHLDKLDPSKITAFEKE 343
           +GQ V + +   +A  Y CGV GH D L       F +E
Sbjct: 376 KGQAVALRVSADMAAAYRCGVEGHQDSLYAHSFRQFYRE 414


>03_06_0128 -
           31879286-31879381,31879463-31879574,31879680-31879747,
           31880959-31881072,31881207-31881247,31881340-31881393,
           31881785-31881866,31882063-31882116
          Length = 206

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 673 LQRYPTSHQRRSVCIACRIC 614
           L+RYPT  +R   CIAC++C
Sbjct: 97  LRRYPTGEER---CIACKLC 113


>02_02_0741 + 13590883-13591582,13591955-13592250
          Length = 331

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 405 CGVRGHLDKLDPSKITAF--EKEFTQHIKTSHQGLLSTIAKDGQITPESDAS 256
           CG +GH  +  P K+ A   EK+  Q + ++     ST  KDG + P S A+
Sbjct: 96  CGEQGHYVRNCPWKVFARSPEKDEKQCLGSNQAPSQSTDKKDGTLQPNSGAN 147


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 373 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTELGKS 540
           ++L+++ ADT     DL+  S   +++ +EE   T+ S + L     +V  EL KS
Sbjct: 41  IKLIDIEADTFARKADLYFKSRPDLINHVEE---TYRSYQALADRYDRVSGELHKS 93


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 673 LQRYPTSHQRRSVCIACRICCSDQGYEAGGRF 578
           L+ Y TS+  +S+ + CR  C   GY A  RF
Sbjct: 438 LKAYITSYTAKSISV-CRESCGGHGYAAVNRF 468


>05_07_0101 - 27690927-27691208,27691695-27692474
          Length = 353

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/93 (23%), Positives = 39/93 (41%)
 Frame = -2

Query: 468 ELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAK 289
           E+L+   Y P  +        CGV G  +  DP  I+      T  ++   +G  S+ A+
Sbjct: 181 EMLRVNHYPPCLLPPGRDRDECGVTGFGEHTDPQIISVLRSNCTAGLQILLRGDYSSPAR 240

Query: 288 DGQITPESDASLKKIVTDFLATFTQSQ*TSLRN 190
              + P+ D+     V D L   T  +  S+++
Sbjct: 241 WVPVPPDPDSFFVN-VGDSLQVLTNGRFRSVKH 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,154,555
Number of Sequences: 37544
Number of extensions: 364165
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)