Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11o12r
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 149 2e-36
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07) 58 9e-09
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16) 31 1.2
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 2.7
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 3.5
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_17274| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_11423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) 28 6.2
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29) 28 8.1
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 149 bits (361), Expect = 2e-36
Identities = 73/157 (46%), Positives = 101/157 (64%)
Frame = -2
Query: 687 ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA 508
E+ +F GIRPA+N G+SVSRVG AAQTK +K+++G ++ LAQYRE+AAFAQF SDLD
Sbjct: 156 ESAMFNSGIRPAVNAGISVSRVGGAAQTKIIKKLSGGIRTALAQYRELAAFAQFASDLDE 215
Query: 507 ATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHI 328
AT++ L G R+TEL+KQ QY PM+I + +Y RG L ++ +K+ AFE+ +
Sbjct: 216 ATRKQLEHGQRVTELMKQKQYAPMSIADMSVSLYAAERGFLVDIEVAKVGAFEQALIAYF 275
Query: 327 KTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFT 217
H LL+ I + G + D LK + F AT T
Sbjct: 276 NRDHAALLAKINEKGDFNDDIDGQLKAGIEKFKATQT 312
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -2
Query: 687 ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 583
ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQ +
Sbjct: 302 ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQTS 336
>SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)
Length = 99
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = -2
Query: 687 ETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 583
++ELFY GIRPAINVGLSVSRVGSAAQ MK++A
Sbjct: 64 DSELFYNGIRPAINVGLSVSRVGSAAQVAMMKKLA 98
>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
Length = 1003
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +1
Query: 106 QQYFRQAKLLI*YGTALQTRVLRSVTRQVT*TSLLRLGESS*EVCDDLLQGGVRLGGDLT 285
++ FRQAKLL+ G L +R + + SL+ + S +VC LLQ G D+
Sbjct: 10 ERRFRQAKLLVQLGDDLNSRSKETGRSPLVQASLIEDEDLSYKVCHWLLQE----GADIA 65
Query: 286 VFGDRG 303
V D G
Sbjct: 66 VRDDHG 71
>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1922
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 354 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 220
F ++ T+ S+QG + I+ G PESD++ +IV + AT+
Sbjct: 952 FARKLTEEEVKSYQGPVHYISHHGLARPESDSTPLRIVFNMSATY 996
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 418 RHHLLRCPRSPRQAGPLQNH-CLREGIHSTHQN*PPGSSLHDR-QRRSDHPRV*RLLEED 245
RH PR P ++H C R + + H+ P LH R S+H R+ R L +
Sbjct: 230 RHLHCHRPRLSNHHRPSRHHHCHRPRLSNHHR---PSRHLHCHCPRLSNHHRLSRHLHSN 286
Query: 244 RHRLPSYFHP 215
R RL + HP
Sbjct: 287 RLRLSIHHHP 296
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 645 VGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAAT 502
+G+S R + + K+V S + E+A+ EV AFA S+ D AT
Sbjct: 1770 LGISEEREQETEELEEHKEVVESEETEMAEEEEVPAFADIPSE-DTAT 1816
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 354 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 220
F ++ T+ S+QG + I+ G PESD++ +IV + AT+
Sbjct: 620 FARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRIVFNTSATY 664
>SB_17274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 354 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 220
F ++ T+ S+QG + I+ G PESD++ +IV + AT+
Sbjct: 3 FARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRIVFNTSATY 47
>SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 390 HLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIV 241
H D L SKI A E FTQ + ++ + + K G ESD+ ++IV
Sbjct: 30 HFDALQ-SKIAAMELRFTQREEDLNRIINTAQIKSGMEKEESDSRWRQIV 78
>SB_11423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 78 SSHESTVDITAVLPSGEAFNLIWDCSTNSSFEISHTSSYVN 200
++H+S D T V SG ++ T S+ ++ TSSYVN
Sbjct: 309 AAHQSVEDSTGVQQSGLGNHI--GAHTGDSYHLTQTSSYVN 347
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 390 HLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIV 241
H D L SKI A E FTQ + ++ + + K G ESD+ ++IV
Sbjct: 1061 HFDALQ-SKIAAMELRFTQREEDLNRIINTAQIKSGMEKEESDSRWRQIV 1109
>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1015
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 513 PSQNRTGQKLRPHGTEPIPASWNRPPAS 596
P+Q R+GQ R G P+PAS +RP S
Sbjct: 953 PAQ-RSGQGKRDQGNAPVPASRSRPVPS 979
>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
Length = 926
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Frame = +1
Query: 292 GDRGEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLN----SHGHILSLL 459
GD GE + DV+ E +++ +L+EV AD GDLFL S I++ +
Sbjct: 696 GDNGE---IVREDVIPEDMVDECRKRRQELIEVVADVDPELGDLFLEEVKPSESQIIAAI 752
Query: 460 EE--LSKTHSSV---EQLLCSGIQVRTELGKS 540
+ +T + V L G+QV ++ KS
Sbjct: 753 RRATIERTFTPVFVGSALKNKGVQVPHQIDKS 784
>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
Length = 651
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 546 PHGTEPIPASWNRPPAS*PWSEQQI 620
P G++P+ +SWN P PW Q +
Sbjct: 452 PRGSQPLQSSWNPP----PWPRQNV 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,783,895
Number of Sequences: 59808
Number of extensions: 407748
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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