Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11o12r
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.89 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 387 LDKLDPSKITAFEKEFTQHIKTSHQGLLSTIA 292
           L KLD SK+TA  +E      T + G +  +A
Sbjct: 21  LSKLDVSKLTALSREVISRQATINIGTIGHVA 52


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 DLFLNSHGHILSLLEELSKTHSSVEQLL 501
           DLF N H HI ++ + +  T+  + + +
Sbjct: 50  DLFDNVHNHIQNIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 418 DLFLNSHGHILSLLEELSKTHSSVEQLL 501
           DLF N H HI ++ + +  T+  + + +
Sbjct: 33  DLFDNVHNHIQNIFKIIKSTNEKITRYI 60


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 148 TALQTRVLRSVTRQVT*TSLLRLGESS*EVCDDLLQGGVRLGGDLTVFGDRGEKTLVASF 327
           TA     L ++ RQ   T ++R G S      D L+        + +F +  E+TL+   
Sbjct: 181 TAATDCQLWAIDRQCFQTIMMRTGLSRQAEYTDFLKS-------VPIFKNLPEETLIKIS 233

Query: 328 DVLSEFLLEGSDF 366
           DVL E      D+
Sbjct: 234 DVLEETFYNNGDY 246


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 376 GPLQNHCLREGIHSTHQN*PPGS 308
           G L   C REGI  +  N  P S
Sbjct: 551 GTLYGRCKREGIELSRSNPTPWS 573


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 4/8 (50%), Positives = 8/8 (100%)
 Frame = +2

Query: 296 IVERRPWW 319
           ++++RPWW
Sbjct: 70  VIDKRPWW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,469
Number of Sequences: 438
Number of extensions: 3711
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)